### Scipio v1.3 output # query file /tmp/MXgT6JrMvK8q.fasta # target file /genomes/genomes_ncbi/Fusarium_oxysporum_f__sp__lycopersici_4286_v1_supercontigs.fasta # BLAT output /tmp/Ytz84u1jgjo3.psl # Timestamp Tue Jun 8 14:32:02 2010 --- Protein: - matchings: - overlap: mismatchlist: - 17 prot_start: 0 nucl_end: 284 prot_end: 95 translation: MALVIPYTYIQCPCSDNSPPDLPQARQSQSSDERTFDPRDPRSNYSLYPLEYLLYCEDCQQIRCPRCVNEEVVTYYCPNCLFEVPSSNLRSDGNR dna_start: 3169997 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 0 seq: atggcgctcgtgataccttacacgtacatccaatgtccgtgttccgacaactctcccccagatctcccccaagcgcgtcaatcacaatcctccgacgaacgaacctttgacccccgcgatcctcgctcaaactacagcctctaccctctcgagtacctcctctactgcgaagactgccagcaaatacgatgtccgcgatgtgtgaatgaggaggttgttacatattactgcccaaactgcctgtttgaggttcccagtagtaacttgcgcagcgacgggaatag inframe_stopcodons: [] dna_end: 3170281 - dna_start: 3170281 type: intron nucl_start: 284 seq: gtaaataacacaaagacgtggtccagactaagcctgacatgcgcctcatag dna_end: 3170332 - overlap: mismatchlist: [] prot_start: 95 nucl_end: 1653 prot_end: 551 translation: CTRSCYQCPVCIGPLQVMETPIEKDQSHLGADIPGPQYALYCQYCNWTSTEIGIKFDKPNGIHSQLSKINNGGDLKLTAKELKERRKENPDEPPLADSDVDTDLQYANLKSFYQSQLADTNAASSGISPLNDTTGYGSPAASLSRIMAMYTGHGHARKRNGPSEXVMREALSAEEGLKLADLDESAQIKKLHQEGWDATATIQQNLEQAEVQRFQDGLRPIPHLLRTKRSKRCSVCRHIISKPENKVTSTRFKIRLVAKSYIPTITIKPLNPTAGTVPTTQRPQILEERPLKPLTPHHYIITFKNPLFDGIKVTLATPNSTPGRFSSKVTILCPQFDIDANTDMWDDALKDDDRDKKRKGEESSGQPEAGKIWERGRNWVSIILEVVPASLRLDGQKDKSPLKEDEDILEIPMFVRMEWEPDSQQDVGAASAKEKDAQERRELAYWCVLGVGRISHD dna_start: 3170332 type: exon seqshifts: - prot_start: 259 nucl_end: 777 prot_end: 259 dna_start: 3170825 nucl_start: 777 dna_end: 3170826 undeterminedlist: - 259 nucl_start: 284 seq: atgtacccgaagctgttaccaatgtcccgtgtgtattggtcctctccaggttatggaaacacctatagagaaagaccagtcacaccttggcgccgacatcccagggcctcaatacgcactgtattgccagtactgcaactggacctccaccgagataggcatcaagtttgacaagcctaacggtattcactcgcagctctccaagatcaacaatggaggagatctcaagctcaccgcgaaagaactcaaggagcgtcgcaaggagaacccagatgagccacctcttgccgatagcgatgtcgatacagatcttcagtatgccaatttgaagtcattctaccagtcgcagctcgcagatacaaatgctgcctcgagcggcatatctccactgaatgacactaccggctatggatcgcctgcagcgtcgttgtctcgtatcatggctatgtacactggtcacggacatgcccgcaagcgcaatggtccttcagaatgttatgcgtgaggctctttcggcagaggaaggtctgaaattggcggatctggatgaatcagctcagatcaagaaactgcaccaggaggggtgggatgctacggctactatacagcagaaccttgaacaagcagaggttcagagattccaggatggtttacggcctataccacatctcctcagaacgaagcgctctaagcgttgctctgtgtgtcggcatattatctccaagccagaaaataaggtcacgtcgacacggttcaagatcagacttgtcgcaaagtcgtatatccctacgatcaccatcaagcctctcaaccccacagctggaacagtccctaccacgcagcgtcctcaaattctagaagagcgaccgctcaagcccctcacccctcatcactacatcataaccttcaagaaccctttgttcgatggtatcaaggtcacacttgctacgccaaacagtacacctggcaggttctccagcaaagtgactattctctgtcctcaattcgatattgatgccaacacggatatgtgggatgatgctctgaaggacgatgacagagacaaaaagcgaaaaggtgaagagagcagtggtcagcctgaggccggtaagatttgggagcgagggcgcaactgggtcagcatcatcttggaagtggttccggcttcactccgacttgacggtcaaaaggacaagagtccattgaaggaggatgaggatattctggagatacccatgtttgtgaggatggaatgggagcctgactctcagcaagacgtcggtgcagcatctgcaaaggaaaaggatgctcaggaaaggagggagctggcttattggtgtgtgcttggagttggccgcatcagtcacgat inframe_stopcodons: [] dna_end: 3171702 unmatched: 0 prot_start: 0 stopcodon: taa downstream: taaagatagaaaaggcatgcacatgagacatagatctagatacccaataattggacgaagtcatggacgggaagaagtgtttaagttgtcttgtcaaatcatacgcagcttgcttgtaacatttatcaagctactttctttaagacgccaagcccctttttttgaccaaccaaccatttgtgaaaaacactcccagcccgaatcagggaaaaatagtcatttcttctatttcatctcgaaaaaggtaacgcacagacttagtagtcggcgggaccgctctgagggaactcgaagttgacgttgcggcctgtcaaacgtcggtagacctcagagtaggtgtcgaggcggtagtcaacaccaccacgctccttctcgtcgaggatgaccttgaggagcttggagccgtcctccttggtgcggacgcgcttgccgacgatctcgacggggtaggtgagatcctcgaggatggcgtcgtggacagcagtgagagttcgcgaacgggggcgcttctgcttctgggtgttgcgagagcgggcggatcgcttggggcggggcaagatgcggcgagaagcgaggatcaggacatggcggtcagagaacttcttctcgagctcacgggtgagactggggagtattagtattgagtctgagattagaagaatgaggagatatcttaccgctgctggacgcggtggaagccctgcagggaagggacggggacaaagatgacaatagccttcttgccgtggccaacctcgatctagtcaagatcccaagtcagcatgcgagctccaggacgaaaccttggaccgcttcccgtcctgttccacagaagtcaatgatactccggctggcactcctccgccccgacgacatgtgtaagcgcatcaagtcaagtatctctcgaatatcgaggtcattttcgacggaaaagtgcgcggtcgggaggcggagaggccattgcgagaacagtgcagttttcttatgtgggaacaggatttctcgaaacgagacctaagttcggaattctttgtttcatggtattctcacctcacgggcagagacgatctgcagaggtcgcagggcaaccttgaggtcggaggtgttggactcgaggtcgaagagagcctgagcgatgctggtctcaagctcggaggggttctgcctcgaagggctgttgggagcgatcttgttaagggcctgggcgctcattttgacggctggttcgactacgtgggattgacgacgacgaagttgatggtgttgcgcgggccgcttggaatttttgatagtaggcaatttcaaaaagtcgctaaattggggttttaccctttacttttctgtgggcggtccgtgcgtcggtgaggatgttgaggttgatgcctgaggcttgagtctagcacaccgaatcttcaccttgttgtcagtggatccagtcaccaatcgtccagaaggggaaatcgactacacttacacagcgtcccgtgtttcgtggacttgatgcaatgaaaggaaagcaatcaagtcaaaggttgcacagcatttcagaagtattcacttatgaatatgcatgatttcaaatcaactctgcttgaatctaagacacgaagccgtgtaactcctgcagctcaaccacactcacaaccacttcaaatggtagaaagcatctccgagacgtccgatgatgaaacaatgcatcgtttacaacattcgtatcaaacatcctgatcctctatccagtttttactgttacacattctaaccctcaccgccctcggggtcctcctcatcctcatcaccgagctgcttatcaacatcctgctggaccttttcacctgtcgtgtcccttgcgatctcggcagccttcataccgccagccgtgagccacaggaagtgatttgtcttgaactggtcaatctggttgaagaacatgtgaaacctgtcgtgtcttgttagccctgtccgacttgtgcatacgtcagtacttacgagttgtcctt additional: 1 prot_end: 551 ID: 1 dna_start: 3169997 reason: sequence shift/mismatches downstream_gap: upstream_gap: target_len: 4034155 strand: + target: gi|145202742|gb|DS231697.1| Fusarium oxysporum f. sp. lycopersici 4286 supercont2.2 genomic scaffold, whole genome shotgun sequence upstream: agtatgtattgtacaccgtttatcagcccatgggactctccgatccgatctatcggagcatctcgaacaccatccaccgaagctagtaggagcattaccttaggctttggtcacagcttgcgcaatacaagtcaagttacagcaaagagaagttggtgtgtgtctctgcatgatgcatcgacagtcacacaacaccacgaacagaatcaatgatgatgatgatcatcgttcttttaaccggtcgccccgggcaaacttgacagcctaagcaagcaatcttgaagagagagtggcgtaatttctttcatggtcaacgaaattgtgttaatctgtgacgtcccgaaatttcgggaattaaaacagggcctctactactccacgggtcttgtctttgttaggcagatttcttcagctccactgggatatgccagattatctcaacagcaaggatcatctacagctacaatccctgactcttgatacatatttacgacaattgtttctgtaaccgccatttatcactctctcagctccggtctgacaacgaattgtcaacttgtgaatggcaacccaaaaccctcagccgcaccgatggggactcgaaggcgtcgggagaccttcaatactcgaacccttttggggaattcagccaagcctagttttctgcttggaccaaggggcaggtccaaagactccagacaggccagagctagagtcagcccagaccaggggcgggacctgaccatcactcgttctggctctagctcaacatgcagagtaagccaagcatgaagtcttcttctgtcatcatgaaataatagcctttgaacgatcgtgaactaaacacctcttctctgcccgtaactcaaagaaccccgcaattgccatgtcgtgcaggcgtcatatgataactagagccaacagggcaatattgactgaatacagaatcaatggagaccggagtccgagtcctcgggttcggaactgaagtcatacaacttcagaagggattctcgttgagtgaaagcgttgagcgaaagccctcgcaagacaaggcgagacggaaaagctcgttaacaaggttgagcttgtctgttgcatgtcagacttgtacggtctagacgcatctggtgccagatcccgtctttcgcttcccgccttatagctgaactcgccactaacaaatagtctcaaacgcggtggacagctttacagtatgctgcacgggatgggatggcattcagggttcaagcttggagcattagccaccctcagttgtgtgtttcaccaagcgaagcttcgaccactaccaaaggtcttttttcctgacaacgccacagtctcggaatgcatgaaatgtgctgaatagagggcttattcatgcttctgcagacgagagtcagggcattaggggattgctcattgaaggctgctggaagccattctgcgttatggtttaaagggtaccaaccaagactcatataaatagacttcaggatgagacaagaccacagtaatatacctagaggcaagaaaagggcctccgtcctaggcaacaaaatctaggtcggtcagtgtaagtttagggggagcatacgcatgataccgagttgaaacaactggtattcatgaccgttgagaggaatgttgaaccgactcagctctccaatactcccagtgaggctgtgagctgagtgtgagaggagtgttgaggacagccaacgtttttcacttttgctttttgtaattttagtaaatgatacaatttgttaagttcaaatggaaagacatgattagtttattcttactataagttcactgatattagtgctactcgggaggtgcatttagttgaatgaatctatgtagaccctgattggcccctcaccgagtgaccatagctctactcacctcacaccgagaacaaagaccccagtttcaagacagctcccttcccaacttcaacccgagtctgccaaactccacgacctcccactgcc score: 0.995 prot_seq: MALVIPYTYIQCPCSDQSPPDLPQARQSQSSDERTFDPRDPRSNYSLYPLEYLLYCEDCQQIRCPRCVNEEVVTYYCPNCLFEVPSSNLRSDGNRCTRSCYQCPVCIGPLQVMETPIEKDQSHLGADIPGPQYALYCQYCNWTSTEIGIKFDKPNGIHSQLSKINNGGDLKLTAKELKERRKENPDEPPLADSDVDTDLQYANLKSFYQSQLADTNAASSGISPLNDTTGYGSPAASLSRIMAMYTGHGHARKRNGPSXVMREALSAEEGLKLADLDESAQIKKLHQEGWDATATIQQNLEQAEVQRFQDGLRPIPHLLRTKRSKRCSVCRHIISKPENKVTSTRFKIRLVAKSYIPTITIKPLNPTAGTVPTTQRPQILEERPLKPLTPHHYIITFKNPLFDGIKVTLATPNSTPGRFSSKVTILCPQFDIDANTDMWDDALKDDDRDKKRKGEESSGQPEAGKIWERGRNWVSIILEVVPASLRLDGQKDKSPLKEDEDILEIPMFVRMEWEPDSQQDVGAASAKEKDAQERRELAYWCVLGVGRISHD prot_len: 551 status: incomplete undetermined: 1 mismatches: 1 matches: 549 dna_end: 3171702