### Scipio v1.3 output
# query file    /tmp/87zfK67kea0g.fasta
# target file   /genomes/genomes_broad/Magnaporthe_grisea_70_15_v6_supercontigs.fasta
# BLAT output   /tmp/wBOFglJrwWmU.psl
# Timestamp     Wed Jun  9 08:24:05 2010

--- 
Protein: 
- matchings: 
  - overlap: 
    mismatchlist: []

    prot_start: 0
    nucl_end: 3
    prot_end: 1
    translation: M
    dna_start: 1483618
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 0
    seq: atg
    inframe_stopcodons: []

    dna_end: 1483621
  - dna_start: 1483621
    type: intron
    nucl_start: 3
    seq: gtgagttgcgccctatcatcgcgcaatcccgcggcggtgccggtatccgccaaaggatctccgctaatctcggtaccttctcaccgcgcag
    dna_end: 1483712
  - overlap: 
    mismatchlist: []

    prot_start: 1
    nucl_end: 3301
    prot_end: 1100
    translation: GITRRGKDKAAAGQAVAGGASGGRARPKKATFETSKKKDVGVSDLTLLSKVSNEAINENLQKRFEGREIYTYIGHVLVSVNPFRDLGIYTDQVLDSYKGKNRLEMPPHVFAIAESAYYNMKAYKDNQCVIISGESGAGKTEAAKRIMQYIASVSGGDSTDIQQIKDMVLATNPLLESFGNAKTLRNNNSSRFGKYLQIHFNSVGEPVGADITNYLLEKSRVVGQITNERNFHIFYQFTKGASEHYRQMFGIQKPETYIYTSRSKCLDVDGIDDLAEFQDTLNAMKVIGLSQEEQDSVFRILAAILWTGNLVFREDDEGYAAVTDQSVVEFLAYLLEVDPQQLIKAITIRILTPRSGEVIESPANVAQAMATRDALAKSLYNNLFDWIVERINQSLKARQPTSNSVGILDIYGFEIFEKNSFEQLCINYVNEKLQQIFIQLTLKAEQDEYAREQIKWTPIKYFDNKIVCDLIESVRPPGVFSALKDATKTAHADPAACDRTFMQSVNGMSNAHLIPRQGSFIIKHYAGDVAYTVDGITDKNKDQLLKGLLGMFQVSQNPFLHTLFPNQVDQDNRKQPPTAGDRIRTSANALVETLMKCQPSYIRTIKPNENKSPTEYNVPNVLHQIKYLGLQENVRIRRAGFAYRQSFEKFVDRFFLLSPATSYAGEYTWQGSYEAAVKQILKDTSIPQEEWQMGVTKAFIKSPETLFALEHMRDRYWHNMATRIQRMWRAYLAYRAESATRIQTFWRKKRTGAEYLQLRDHGHRVLQGRKERRRMSILGSRRFIGDYLGINASSGPGAHIRNAIGIGSNEKTVFSCRGEILEAKFGRSSKASPRILIVTNSKFYVVAQMLVNGQVQITAEKAIPLGAIKFIGASSSRDDWFSLGVGSPQEADPLLNCVLKTEMFTQMERVMPGGFNLKIGDSIEYAKKPGKMQVVKVLKDSPNPVDFYKSGAVHTQQGEPPNSVSRPTPKGKPVPPRPITRGKLIRPGGPNGRPARGTTNRTPQPRPGGASASAVASRPVPQAQPQAQAQVAASIPVRTQQQSQTSSASVRAPPPPPPAAPPAKAKIMAKVLYDFAGQKENEMSIKEGDLIEIVQKENN
    dna_start: 1483712
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 3
    seq: ggcattacacggcgagggaaagacaaggctgccgccgggcaggcagtcgcggggggagcgtcgggcggcagagcgaggcctaagaaggcgacgttcgaaacgagcaagaagaaggatgtcggcgtctcagacctgacccttctcagtaaggtctccaacgaggcgatcaacgagaacttgcagaagcgattcgagggtagggaaatctacacatatatcggccatgtgttggtttcggtcaaccccttcagggacctggggatctatacagaccaggtcctggacagctacaagggcaagaaccgtctcgagatgccgccgcacgtcttcgccatcgccgagtcggcttactacaacatgaaggcatacaaggacaaccagtgtgttatcatttcaggcgaatcgggagcgggcaagaccgaggccgcgaagcgcatcatgcagtatatcgcgagcgtctcagggggcgactcgactgatattcagcagatcaaggacatggtgttggccacaaatcctctactagagtcctttggcaacgccaagactttgaggaacaacaactcatcgcggttcggaaagtacctgcaaatacacttcaactcggttggcgagccggtgggtgccgacatcacgaactacttgctggaaaagtcaagagtggtgggccagatcacaaacgagcgcaactttcacatcttttaccagttcaccaagggagcctctgagcattaccggcaaatgtttggcatccagaagccagaaacttacatctacaccagcagatccaagtgtctcgacgtcgatggaatagacgatcttgcagagttccaagacacgttaaatgccatgaaagtcattggattgtcacaagaggagcaagatagtgttttccggatactggctgctatcctgtggaccggcaacctcgttttccgtgaagacgacgaaggatatgcagccgtgacagatcagtcggtggtggaatttctggcgtacctgcttgaggtcgacccccagcagctcatcaaggccatcaccatcaggatattgacaccgaggagcggggaagtcattgaatcccctgccaatgtcgcacaggcaatggcaaccagggacgccttggccaaatcattatacaacaacctctttgactggatcgtcgagaggataaaccagtcactcaaagctcgccaaccgacgagcaactccgttggtatcttggatatttacggtttcgagattttcgagaaaaacagcttcgagcaactttgcatcaactacgtgaacgaaaagcttcagcagatcttcatccaacttaccctgaaagccgagcaggacgagtacgcacgtgaacagatcaagtggactccgatcaagtacttcgacaacaagattgtgtgtgacttgatagaaagtgtacggcctccgggtgtgttttctgccttgaaggacgccaccaaaacggcgcatgccgatccggcagcctgtgaccgcaccttcatgcagagcgtcaacggaatgtccaacgcccatttgatcccaaggcaaggtagcttcatcatcaagcactacgccggtgacgtggcatacacggttgatggaatcacagacaagaacaaggatcagcttttgaagggtctcctgggcatgttccaagtcagccaaaacccgttcttgcatacccttttcccgaaccaggtggatcaggacaaccgcaagcagccaccgaccgcaggagacagaattcgcacctcggcgaatgcgctggtcgagaccctgatgaagtgtcaaccttcatacattcgaacaatcaaacccaacgagaacaagtcaccgaccgagtacaatgtccctaatgtcctgcatcagatcaagtatcttggtctgcaggagaacgtgcgcattcgccgcgctggattcgcgtaccgacagtcgttcgagaagtttgttgaccgcttcttcctcttgtcacctgcgacatcgtatgcgggtgaatacacgtggcaaggatcgtatgaggctgcggtcaagcagattctcaaggacaccagcattccccaagaagagtggcagatgggtgtcaccaaggcttttatcaaatcacctgagactctgtttgctctggagcacatgcgtgacaggtactggcacaacatggcaacgcgcatccagcgtatgtggagagcgtacctggcctatagggcagagtctgcaactcggatccagacattctggcgcaagaagaggacaggggccgagtacttgcaacttcgagaccacgggcacagggtcttgcaggggcgcaaggaaaggaggcgcatgtccatactcggatcgagacgattcattggcgactacctgggcatcaatgcttctagcgggccgggcgctcacattcgcaatgctattggcatcgggagtaatgaaaagaccgtgttctcatgccgtggtgaaatccttgaggccaagttcggccgttcaagcaaggcaagcccacgtattttgattgtcaccaacagcaaattctacgtcgtcgcgcagatgctggtcaacgggcaagtgcaaatcaccgcggagaaggcgataccgcttggtgccatcaagttcattggcgcatctagttctcgtgacgattggttctccctcggcgttgggtcccctcaagaagcagatccgctgctcaactgtgtgctgaagacggagatgttcacacagatggagcgagtgatgcctggaggtttcaacctcaagatcggagactctatcgagtacgccaagaagccaggcaagatgcaggtagtcaaagttttgaaggattcccccaaccctgtggacttttacaagagcggcgctgtgcatactcagcaaggagagccacccaactcggtctcacgtccgacaccaaagggcaagccggtgcctccacgaccgattacaagaggaaagctcatcagacccggcggccccaatggacggccggctaggggcacgacgaacaggacacctcaaccaagaccaggtggtgcaagtgcaagtgcggtggcatcccggcccgtcccgcaggctcagccgcaggcgcaggcgcaagtcgctgctagcattcctgtgcggacgcagcagcagtcacaaacatcctcagcatcagtccgcgcgccacccccgccaccccccgcggcccctcctgccaaggcaaagatcatggccaaggtgctgtatgattttgctggccagaaggagaacgaaatgtcgatcaaggagggagaccttattgagattgtgcaaaaagagaacaatg
    inframe_stopcodons: []

    dna_end: 1487010
  - dna_start: 1487010
    type: intron
    nucl_start: 3301
    seq: gtaagttctttttctgtcccgtattatcgaaaaacaggaccaagtcgaaatactaactatctccag
    dna_end: 1487076
  - overlap: 
    mismatchlist: []

    prot_start: 1100
    nucl_end: 3636
    prot_end: 1212
    translation: GWWLAKSGNQQAWVPAAYVEEQKQAPPPVAASRPPPPAPPAANGKNKPLPPAKRPAAGKKPASLQPRDSGMSLNGSDGSRSNTPTPSLGNSLADALLARKQAMAKKDDDDDW
    dna_start: 1487076
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 3301
    seq: gatggtggcttgccaagagtggtaaccagcaggcgtgggtaccggcggcatatgttgaggaacagaagcaggcccctccgccggttgcggcttctcggccacccccaccagcccctccggcagccaacggcaagaacaagccgttgcccccggcgaagcgtccagctgctggaaagaagcctgccagccttcagccgcgtgactccggcatgagtctgaacggatccgacggcagccgcagcaacacgccaactccaagcctgggcaacagtctggctgacgcgctgcttgcgaggaagcaggctatggccaagaaggacgacgatgatgactgg
    inframe_stopcodons: []

    dna_end: 1487411
  unmatched: 0
  prot_start: 0
  stopcodon: tga
  downstream: tgattcaccttgctgtttgacgtactgtttctgatacgtaggtgtcaaagttgagtttgttcagtgtgtggttttcaccccgcgacattggctggtccgagaatcgaagttagactggactatataacaggtggtttgttaactgtttgacccttgaggtaatgaatcagttattcctcctctttgcttcccttttgaccgcattgctgttactcggcgattttcagcggctcatatagatgttgatgagatttggtacgaagataagaatcaatgatcaatagcatgaaacccaaaaatttcgccaaccgagttgactgtgtatttagaggctgtactgtactaagtatcattacgtatctgggtttcgagacgcgaccctccgacgtcgtaacagctcccccaatggaacatcctcgtcttcatcatgatcaaaatccgcattatgggggacgatgtcatcttcaaccacatcgtctgaatcctcgtcaacgccaaagtcacgtaatcgctccccgtcagcattggtccagccgggttccccgtctagccctttctcgtacttttcacgtttcctttgttcagggaagagatcctcgagctcctcatcttcctccagctctgcaaagatacccgagccctgctgagcctccatcagctgcctccgtctcctcagccgctggtccctctcctgcctggccttgaacgcagccttctcctcctcgggcgtggcgtacgtcggcaacttgacggccgtgtcggcgttgcccctccagtggccgcggcgctgcttgtccgggtccggaggcggccacatgcccgcctgcgcgttgaatccgttctcctcccagtcccagccgaccccagacccggccgtccgcgacacggtcggcccgccggcaaacggccagaaccaggccagaaagttgcgtgtgcccatcgcctggcacatgttgttccagatcccaatgtcgtaggggaactcgacgcggcgcagggtcttctgcccgtttgaaggggtcgtagtctcttccgatgaagactcctcgccgccctcctcctcctcgctggcccaccacgtcgagccgccgcgggcctgcctgcccaccaggctctcgtggcgctccacctcccaatcctctatcatggtgcggttgaagagccacgcctttgtggtggtggtcagcaggatgccgagggcgagggaaacgagggcgcaggcaatggccacgacggtgagtagggcgatccgggtgggcgaggggccgaggtaggcgggcaggttacgctcgtcgaagagggcgcggaagcgcaggtagagcaagcgggagaggtaccacagggcaaggttggtcgagacgaggaagcggtagaagtagggaaacgtctgcatcgacacgcagttgccggtccacgggcagtggtggtccattttggggatacagcggcggcagtggcggcagtggtgggcacggggaggcttgggcgcgtcgcacttgcggcaccacctctggccggcagcgggcgtcataggtttctgccgctcatcttcttgcttcttccctttcgtcttgtcgtcgacgtcgtcgtcaccgctcggcggtcgtgcgtgggtgtaggttcctggcgggacggtgcaggctttgtagtagttccaccacaggttgaggaggagcaggttaaaggtgatgatttggttcttggacagaggccctggttggaggtcgggtgtgtggaaaacccattgtgaagcgtagcccaggaacgcaatgaggaggactacaccgggtattgcaaatatctgcaggcccgttgttacagggccggtcaggggtgccatcttgactttcgtcttccggcgacaggtcctcttatcccccttcttttctctttttgaagagagttgttggtggactttggactcaaaacttacaatggtgtcttcttcgtatagaatccagttgacttcttccggattgccctgagacttcgggttagtg
  additional: 0
  prot_end: 1212
  ID: 15
  dna_start: 1483618
  reason: 
  downstream_gap: 
  upstream_gap: 
  target_len: 4259588
  strand: +
  target: supercontig_6.21 of Magnaporthe grisea 70-15
  upstream: ataccatagtacaaaaacagcaatagctaggatgtaatcaaaattaaacttgcctgaggggatgcatgatcgccgcccatgcacttttgacatctccgccatctcctgccacggcttacctgtctcgaaacatgggattttgtactaccacagggcgggattttgagaatctgatgcaatcatctccataatacccccttggccgcttatgttagtttggcactccgattgtcgttgattacctgcatcggctggatcgagaaacatgatggctttctgcatcgacatctggatttgcatcgtaaccatccctctcaaaacgcaacattcattctgctgtggtgtagccaagtctgattaaatttggcctacctcgacgttcgatcgacctgcacgtttgacgctttcctaacttacttacagtcgaccgcgtcagcacatggctggtacctgggaaagcagcagcctaatgactctttcgtatggtttcccccctcctttctcgaagaccatgttttatgctggttaatttgcggtgagcaattatgacaccccttcactgtatgtcaaatagtttcgtcaaactgaaatgcgtttgatggcactggatctgtactgcagatgagcagacttgagtacttggctgactctgtgacacgagtgacatactatctttaacgccaagctgtgattcaagagggaaaaaagaaaggaagaaaaagcccagaatggccatcacccccaatcagcttgtgatagagaatatggggtcgaccttgcacattctctactcaagatcacaaacaggaagcctgcgcacgagcgcctgaggaaacgccaagataggcgcaccgcgaacactgggcggggtaggtggaactgatagattgcgatacgaagttctctcatcaccattctacgtgtatccccaggtcggatggtgatgatgtgttcgcgacgcggcaaacagcaacctcatacggagagacccaaggctaagcctattttgctagggacagcagccccttggaaactaatttccagcaagtatgtattgagtgacatggtattgttggaatcaaggtaatctgtggtttcttgacacgccatggacgacaggcatcactgatagcagaacgttttgcgtggacacgaggctgcagacagaaagggattgtttgttgaaaactttcatatcacggcaaaagttcaatctgatctttttcgtcgcgggcatcggacgaagcggtcatgaacgcagagagaatctcggccgcaccgcgtctatactacccatggcgccggtcgggaacacggtagtaccggaatatggccagctcatatccggatttaacaagacccggttggtatgcgcgagtcgtgagcaagtccacaggtgctgagaaccttggcagctggtctgcgagcaagtcatgacccggggttttattccgccaagccatggttgagcttattcgtcatcctcgagtttgttcctgcctttgcctcacctgcctcaatccaattattatgtaatcaagtagcaacgtggctgtgggctgtaattgcagccaagcaccagccactgttattcgtccggttgctcaattggagtggctgggcctgtagctttgccagcgggcgccaaagtaactgttagtggggcaattcgtcactcctgcatccaccgtcaggcagcgccgccaaggttgacgtttcgtaagtgatgaggcgaagcaatccaacaaacaacctgccaatgcaagctgtgcattctgtgccagagtgacaaacgacatacgtgcagcaaaagaaggcacgcgcattcgctactgattgcttcgaaaaccagttggatcgcatccacgttcgagattcttcatacaccattacagagtgcatcttacatcgagagtgttgtgctccgactcaagccccgataaacctgtgtttcgtttcagccagcttgcatgtttgcccctgcactagggtgatcatca
  score: 1.0
  prot_seq: MGITRRGKDKAAAGQAVAGGASGGRARPKKATFETSKKKDVGVSDLTLLSKVSNEAINENLQKRFEGREIYTYIGHVLVSVNPFRDLGIYTDQVLDSYKGKNRLEMPPHVFAIAESAYYNMKAYKDNQCVIISGESGAGKTEAAKRIMQYIASVSGGDSTDIQQIKDMVLATNPLLESFGNAKTLRNNNSSRFGKYLQIHFNSVGEPVGADITNYLLEKSRVVGQITNERNFHIFYQFTKGASEHYRQMFGIQKPETYIYTSRSKCLDVDGIDDLAEFQDTLNAMKVIGLSQEEQDSVFRILAAILWTGNLVFREDDEGYAAVTDQSVVEFLAYLLEVDPQQLIKAITIRILTPRSGEVIESPANVAQAMATRDALAKSLYNNLFDWIVERINQSLKARQPTSNSVGILDIYGFEIFEKNSFEQLCINYVNEKLQQIFIQLTLKAEQDEYAREQIKWTPIKYFDNKIVCDLIESVRPPGVFSALKDATKTAHADPAACDRTFMQSVNGMSNAHLIPRQGSFIIKHYAGDVAYTVDGITDKNKDQLLKGLLGMFQVSQNPFLHTLFPNQVDQDNRKQPPTAGDRIRTSANALVETLMKCQPSYIRTIKPNENKSPTEYNVPNVLHQIKYLGLQENVRIRRAGFAYRQSFEKFVDRFFLLSPATSYAGEYTWQGSYEAAVKQILKDTSIPQEEWQMGVTKAFIKSPETLFALEHMRDRYWHNMATRIQRMWRAYLAYRAESATRIQTFWRKKRTGAEYLQLRDHGHRVLQGRKERRRMSILGSRRFIGDYLGINASSGPGAHIRNAIGIGSNEKTVFSCRGEILEAKFGRSSKASPRILIVTNSKFYVVAQMLVNGQVQITAEKAIPLGAIKFIGASSSRDDWFSLGVGSPQEADPLLNCVLKTEMFTQMERVMPGGFNLKIGDSIEYAKKPGKMQVVKVLKDSPNPVDFYKSGAVHTQQGEPPNSVSRPTPKGKPVPPRPITRGKLIRPGGPNGRPARGTTNRTPQPRPGGASASAVASRPVPQAQPQAQAQVAASIPVRTQQQSQTSSASVRAPPPPPPAAPPAKAKIMAKVLYDFAGQKENEMSIKEGDLIEIVQKENNGWWLAKSGNQQAWVPAAYVEEQKQAPPPVAASRPPPPAPPAANGKNKPLPPAKRPAAGKKPASLQPRDSGMSLNGSDGSRSNTPTPSLGNSLADALLARKQAMAKKDDDDDW
  prot_len: 1212
  status: auto
  undetermined: 0
  mismatches: 0
  matches: 1212
  dna_end: 1487411