### Scipio v1.5 output
# query file    /tmp/64qvLYQfWwN1.fasta
# target file   /genomes/genomes_ncbiref/Drosophila_melanogaster_v5_chromosome.fasta
# BLAT output   /tmp/dyVvX4HkXGh0.psl
# timestamp     2013-02-05 15:56:02
# parameters    --show_exon=type,nucl_start,nucl_end,dna_start,dna_end,prot_start,prot_end,seqshifts,mismatchlist,translation,seq,undeterminedlist,overlap,inframe_stopcodons --min_score=0.3 --min_identity=90 --min_coverage=60 --max_mismatch=7 --region_size=2000 --single_target_hits --max_assemble_size=75000 --max_move_exon=6 --gap_to_close=15 --min_intron_len=22 --accepted_intron_penalty=1.0 --blat_score=15 --blat_identity=81 --exhaust_align_size=15000 --exhaust_gap_size=21 --fast_nw
### end of Scipio output
# Timestamp     Tue Feb  5 15:56:02 2013

--- 
Dm_Myo7B: 
- ID: 13
  status: auto
  reason: 
  prot_len: 2121
  prot_start: 0
  prot_end: 2121
  prot_seq: MSEFVRQHGEYVWVKPQNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFWVPAGDVLKAMHITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTGSMLVAINPYQILPIYTNREIQLYRNKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHSWIEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQRTIFVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNNSFEQLCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEMPMDTAKKQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKLARQICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVRCRTIKLQALSRGYLVRKDFQKKLLERRKQNQLKKEELLKLAKMKEAEELLRLQQLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMAAVQQKRRTKPVKQEAPKAPTLQARNSLPPPPTTLIVAAPLPTRPASAVTRINTIPESPGTIDVESSKQMVDDVFRFLNDEPDAALRKLNNISSGDTIRLPKSVPNNIDTSDFSYLKYAATYFGGGATAQHERKPLKKSLLKHEHPIDEMASKAIWLTILRFMGDLPDVVSSPTLHVFDNENLMSDLASLLNTSDSYKPRLFVRQSQRRIPKPLASGEKEAQEFYQHWLNVPTSHLEKIHFIIGHGIIKNSLRDEILAQICKQLYLNPSRSSYSRGWLLLSLCLSCFPPSKEFEPHLRSFMKQGTAQLQATPSLQRLERTLVNGPRCQPPSLFELHAIRGRHPLRLDIHLMDGQQRRLQVDAASTAREAVNQLCQGMGLTDTFGFGLVMSLNGKLMPLGAGQEHVLDAISECEQRQLDAPWKLYIRKEMFATWYDPSMDPKATQLIYKQILNGLKCGEYRCRSEKDIAMVCALACFVEYGPGEILRLKPSEITAFVPSDLLAPGERAIENWSRLIAATYEKSSYVKEEQNDLLLEAQKRAKEDICLFAHLSWPMRHSRLFEVVRKEGPKLQSDELMLGINSAGLFLIDETEQVLASCCFSEVLKVHVESDDKLHVMTFQHVNFVLQCSSAQDANEVINYMLDNLRQRSSYGVALDPVVEGDLEDCLVLNPGDLIEFEAGVTGAQLMAGNAQDCYRGCVNGQWGQFLAGNVRVLATLTKPSEKLQDILREGRFQEPPKPTPRANYSRRRQHNISQLAESHFREPLDSDKAPLSKFSPEPLKAPLLKAVVKVPPLFQQALVMHHHILKYMGDIARSNLPVNTDLIFQPALQHPLLCDELYCQLMKQLSDNPSSESEKRGWDLLYLATGLVAPSVLVMRELIILLRMRADALADACLKRLKRSLAQGQRKKAPHLIEVEGIQQRCLHIYHKIYFPDDTVEAFEIESHTRGAELIADIAQRLELKSPVGYSIFLKTGDRVYAMPEEEFVFDFITQLIYWLRQQRTIRSISDGQYQLHFMRKLWLNNHPGEDLNGDMIFSYPQELHKYLKGYYPIDCEQASRLAILVYSADHDVSLQRLPEVLTRLIPEDLIPLQTVAEWRQQILPKVHRDHLTEDHAKILFLQELSHFACFGSTFFVVKQQNDDALPETLLIAINSTGFHMLDPTTKEILRSYEYSQLGIWSSGKNHFHIRFGNMIGASKLLCSTTQGYKMDDLLASYVKYFNEHE
  target: gi|116010444|ref|NT_033779.4| Drosophila melanogaster chromosome 2L, complete sequence
  target_len: 23011544
  strand: +
  dna_start: 7678896
  dna_end: 7689412
  matches: 2121
  mismatches: 0
  undetermined: 0
  unmatched: 0
  additional: 0
  score: 1.0
  upstream: atgttgctcctgctaagcagacttgcaggataatcctaattgcgcttttaacgcgcacctctcgcccctcctgcgagctttccaagagggttcgttgcattccgccaaggactcgattacgctgcgaaatgaagaaaagccgagggggattagtggttgctgttggcaggattggcagccacatccttttgcgcccgggaaagtcacaccccagatgccgcagatactcgcgtcttccgatgtttttttttgccggcacgtgctattcgctgtccccatgggcacctgcaatttattacagccacttgaagctgctccctcgcttatcgtccaaataatctactgacaacgatgacgttacggccaaacgaaaagttagggggagagccaaaaccaaatttagtatcaacgagaaaatggtgaactccagtcagtctgggagctctcaagtcgctaatctgctagtagagtacataaaaatacattcgataatctcttctaaaacgaaatgcaattgtaataagaaaaacaatatttggttgttcagttttgatatatgttgtgtaagcattttttgttatttagtgagcacaacgtaaagggaaacggccacatgtcgtatgagtaatattttagtatgagttaatacgttaacaaatatgataaattcaattgattaaatgaggctatacattttatttacaaaagcattagccggcacttgcacttcaaatgaagttagttttgtttatttgctgctagtagtatctcgaccactggttgctaaataaacaaacccattcaattatgattattaagcttaacaaatgactaaagcagatgacaagcgctgtcgctgcgttgagaatgacgaattccaacaattaacggttggactctgtaatctttattgaaatcgaaatttatgtactgaacacattgcgtggggtgaaagggagaaatttcaaaaaggtaatcgtttttaaatagacacctgcttgtgatacttatatcaataatacgaactgcgtagtaaattcttatattattgaagcaaatgtcaattcgaaattgatttatcaacttgattgtctaacaatgaattaacaataaaaaaaaggttcattgatgagcaaaggaaaacaaactacatagtatttgtatttaaatcatacccaaacaaaatgtaattaaaatatattttctattctgatttgagttgcattacaacattatactgtttttaaatactctaatttaaaatttactagattattacaaaactttgaaatccctgtattcttacaaaaaaaaaataactgttaaagtcaaattgaaacaataatgatatgtgctctaatcgcacatgatggttctttccctaaatcgcaattgaacgacgctggtcattggcaccacctcatggctgggtacttcagattgcattatattggtattagcttgcgttatccatgaggtacggaacactcatgatcaatcacatgactcatgggcagggtcagttacggtgatattcgcatgtaagccaatgtgcagctcatggttagataagcggcgatttgtgagatacacgattatatggctaatcatgacgtatgcaaaatgcatgtggtgcggtgagcagcatacggcatatcccctggaagccgaatttgtatttcgctgagagcgccgccatatggagacagtgtgacgataagggctgccaaaaagcattcaatattcattatcagacgagataacagttggcaatactcactccgccagccgaatcgttcgaggaccccgttgagcagagcccagacgtttgcgagactccgaaccgaacagaactacagaaaacttcgattaaaaacggctgtggcaacagaaccgaaatctttgggcaaatatttgccaattaagaaccgtcgacggcgcgtgtgtctgtgaagtggggtgaagtgaaattggccaggccaataaaaaaaaaagcagtc
  upstream_gap: 
  matchings: 
  - type: exon
    nucl_start: 0
    nucl_end: 24
    dna_start: 7678896
    dna_end: 7678920
    prot_start: 0
    prot_end: 8
    seqshifts: []

    mismatchlist: []

    translation: MSEFVRQH
    seq: atgtccgaatttgtgcggcaacat
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 1
    contig: 1
  - type: intron
    nucl_start: 24
    dna_start: 7678920
    dna_end: 7680607
    seq: gtaagtgcgaatgccaaaaccgtaagcgtttagatcgacttcctggttgtcgtggcagtttttcccatccattctctctggttatcagaaaattactatgataaccgaatcgttttatcacattcctttggcagagcctctgctttaggcacatcatgggtctcattttaattttaaacttccctcctcttatcaactacactcacctacacgtggggtgttaattggaatgtagtaatacctgtgattatgggcataaagtattaacgagcaggtagcctaacaaaagattgtgtccgtcacgagctcaaatatgtctcgggtttcatttgcagaatacaaccaaaaatagcactatataaattccttatacttcctctctgagcaaatgtcttatcaaaatcgaagccaattatcgattgagtttagtcgccacaggaacagagatacgaaaaagctctataaaactctttggctaaagtaaacccgaaactacttaaggtagaatacattgcctttgattatgttttcgttatcagtctgtttttgtttattctaatccttccaaaaaaattagtattatacacccattagctaacactaatggttaaaatatttttgattactcgcagaaatgactcattgtttaaggaggtgatctcatggtcgaacactttagtataagcaaccgattttcaatcagtatttatggcgaaagtatagttctaaaatacaaatagatcggttttttatggcaggtgctcatgtcttttttttttggaagtggtaatgggtgacatcaactgatttcggttcgattggactttaatcttatcgcgaagtagataagcaaggtcgtagaagattgatgccagaaaatcaaattgtctagattacgtagattaaaatcatttcaaaattgttgctcttcgtggtgatccttagcttttggcaatgattacttgttcggctcccatgtcatgtcttcttctgttcacagttttattccgaaataccgataaaacgtccttgtatatcggcattccgccgataagataacgcctggcaacaactacttgcaaatgttggctaccgtttgctttcattacccatatttcattcacctatttctaaggcaatttatataaagcagacaaagtaaagtcaccgaaattggtttgggtgtggcaaagctataaaatatatctatatttcattggataattaagagtggcacgggttaattatttaacaacgcatttgatacctttctgatttcttatcgcagtctaaaatcgactaatataggcgccatatactaaagcattgaatataaggtgtttcgttagttaaataatagttaaaaaataaagttgaaagttcgttgatctctgccttaataaatgtgtcatatctatataagcctctgttaagttctcaggctttatttttcactttatgaacagtcaggaatttaaatttataaacttccaatgttatatcatttccactcggcggtgtaataatatcttatcagtatttacatttgagatatgacccactaccagttgccaataaaatgtttttgatttgccactgggttaatattgggcttgtagaattttggtgataatttaaataattccctgactttaatctctgatattttgtgatttcattaatacag
    number: 1
    contig: 1
  - type: exon
    nucl_start: 24
    nucl_end: 288
    dna_start: 7680607
    dna_end: 7680871
    prot_start: 8
    prot_end: 96
    seqshifts: []

    mismatchlist: []

    translation: GEYVWVKPQNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFWVPAGDVLKAMHITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIY
    seq: ggcgagtatgtgtgggtgaagccgcaaaatactaccagcgaattcgcagtgccctttggggctcgaattgtgcgaacggagaaaacacagaccctagtttgcgatgaccggaacaagcagttctgggttccagctggggatgtcctgaaggcaatgcatatcacctcccaggaggatgttgaggatatgatcactttgggtgacttacaggagtacactatactgaggaacctgcagaacagatatgccaagcaattaatatat
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 2
    contig: 1
  - type: intron
    nucl_start: 288
    dna_start: 7680871
    dna_end: 7680935
    seq: gtgagtttactagtatttacttaataagttgcctagctagctaaccatatgtaaatatttttag
    number: 2
    contig: 1
  - type: exon
    nucl_start: 288
    nucl_end: 1410
    dna_start: 7680935
    dna_end: 7682057
    prot_start: 96
    prot_end: 470
    seqshifts: []

    mismatchlist: []

    translation: TYTGSMLVAINPYQILPIYTNREIQLYRNKSLAELPPHIFAISDNAFQRLQRLKENQCVVISGESGAGKTESTKLILQYLAAISGKHSWIEQQIIEANPIMEAFGNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDERNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKDFADIRAAMKVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEIDDTPNLQRVAQLLGIPISALNAALTQRTIFVHGEHVTTSLSKEAAIEGRDAFVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNNSFEQLCINYANENLQQFFVGHIFK
    seq: acctacacaggctccatgttggtggccatcaatccgtaccagattctgcctatctacacgaatcgcgagatacagctctacagaaataagtcccttgctgaactacctcctcacattttcgccattagtgacaatgcctttcagagactacaaagacttaaggagaaccagtgcgtggtgatcagcggggagtcgggtgccgggaagacggagagcaccaagctgatccttcagtatctggccgcaattagtggcaaacactcgtggatcgagcagcaaatcatagaggccaatcctattatggaggcctttggcaatgccaagactgtacggaatgacaactcttcaaggttcggaaagtacatcgagatcagattcacgccacagggcgctattcaaggagctagaatccagcagtatcttctggaaaaatcccgaattgttttccagagtcgcgatgagcgcaactatcacattttctactgcatgttggcgggactttcaactgcggagagagagcgcctaaagctacaggagcaatcgccaagtcagtatcattacttggcccaaggaggatgctttactttgccaggaagaggtgatgccaaggattttgccgatattcgagcggctatgaaagtgctttcatttaagccggaggaagtgtggagcatacttagtttactggcggctattttgcacttgggaaacctcagattcacagccaccgaggttgccaatttggctacggctgagatagacgatacaccaaatcttcagagggtggctcaattactgggaatacccatatctgctctgaatgctgctcttacgcaaagaaccatctttgtgcatggtgagcacgtgaccaccagtttgtccaaggaagcggctattgagggtcgagatgcttttgtaaaatcgttgtacgatggaatttttgtgcgcatcgtgcgaagaatcaatgagactataaacaagcaagtggatcagcccatgaatagcataggtgttctagatatcttcgggttcgagaacttcgacaataatagctttgaacaactgtgcatcaactatgccaacgaaaatctacagcaatttttcgtgggacatatcttcaag
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 3
    contig: 1
  - type: intron
    nucl_start: 1410
    dna_start: 7682057
    dna_end: 7682112
    seq: gtaagtgaacaaaataaaatatgtgatatcgttactaacaaaagcttccacacag
    number: 3
    contig: 1
  - type: exon
    nucl_start: 1410
    nucl_end: 1926
    dna_start: 7682112
    dna_end: 7682628
    prot_start: 470
    prot_end: 642
    seqshifts: []

    mismatchlist: []

    translation: MEQDEYQNEHINWQHIEFQDNQQILDLIGMKPMNLMSLIDEESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGIRHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEMPMDTAKKQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPK
    seq: atggaacaggatgagtaccagaacgagcatatcaactggcagcacattgagttccaggataatcagcaaatcctcgatctaattggcatgaaacccatgaacttgatgtccctcatcgacgaagagtccaagtttcccaagggcactgatcaaactctgctcgaaaagctacatgttcagcatggtaatcgatccatttacgtgaaaggtaaaaccacccaaacgtctctattcggaatccgtcattatgccggcgtcgtgatgtacaatccattgggctttcttgaaaagaacagggattcattcagcggagatcttaggactctggtgcagcgatcaacaaataaatatctggtggacatattcccccatgaaatgcccatggatacggccaagaagcagcccactttgtgcgtgaaattcagaaactctctggacatgctgatgcgcactttgtcgcaggcacatccctactttatccgttgcatcaagcccaatgaatacaaggaacctaag
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 4
    contig: 1
  - type: intron
    nucl_start: 1926
    dna_start: 7682628
    dna_end: 7682729
    seq: gtgagtgaaagattattcagttgaaataatttaattcaaggatgtaccttttcgaacctttttaagtactaatacaatatactgtttctactttttcttag
    number: 4
    contig: 1
  - type: exon
    nucl_start: 1926
    nucl_end: 2946
    dna_start: 7682729
    dna_end: 7683749
    prot_start: 642
    prot_end: 982
    seqshifts: []

    mismatchlist: []

    translation: NFDKELCVRQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKLARQICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRGIRRVLFRRYMKRYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQQLTTKFTMVRCRTIKLQALSRGYLVRKDFQKKLLERRKQNQLKKEELLKLAKMKEAEELLRLQQLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMAAVQQKRRTKPVKQEAPKAPTLQARNSLPPPPTTLIVAAPLPTRPASAVTRINTIPESPGTIDVESSKQMVDDVFRFLNDEPD
    seq: aactttgacaaggagctgtgcgtgcggcagttgcgctactcaggaatgatggagacggctcgcattcgaagggctggctatccgatccgccacgcctaccgtgccttcgtggagagatatcgcctcttggtgccaccggtgggacctttggagcaatgtgactgccggaagttggcgcggcagatctgtgaagttgccctacctgccgattctgatcgtcagtacggaaaaacaaagctgttcctgcgggacgaggacgacgctagcctggaactgcagcggtcccagctgatgctcaagagtatcgtgacaattcagcgaggaatcagacgggtcttgttccgacgttacatgaagagataccgcgaggccattattacggttcagagatattggcgaggtcgcctgcagcgtcgtaagtaccaggttatgcggcagggattccatcgcctgggagcctgtatagctgcgcagcagttgaccaccaagttcacgatggtcaggtgtcgaaccataaaactgcaggccttgagtcgcgggtatctggtacgcaaggacttccagaaaaagttgttggagcggcgaaagcagaaccagctgaagaaggaggagttacttaagttggccaagatgaaggaagcagaggaactgctaagactgcagcaactgaaggagcagaaggagagagaacaaagagaacagcaggaaaaacgattgcaggaggagcagaggctcaaggccgaagcagcagccagaaatgcattggccatggctgcagtgcagcagaagaggcgaactaagcccgtcaagcaagaggctccaaaggctccaaccctgcaagcacgcaactccctgccaccaccacccaccacactgatagtagctgccccactacccactcgaccggccagtgccgttaccagaattaataccatacccgagagtcctggcaccattgatgtggagtcctccaagcaaatggtggatgacgtgttccgcttcctaaacgatgaacccgat
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 5
    contig: 1
  - type: intron
    nucl_start: 2946
    dna_start: 7683749
    dna_end: 7685762
    seq: gtgagtggtcctctggggccgaatgtcaaagagaagtctatgatgttcgagcaggcattgcgtctgcgtagagatgtgcccaccaagctcctttcccgcccggtcaactattacgaggcggcgcctaggaagattgtcaaccagacccgcctctagtagcgaatcaggctgggactggaaaagatccgaacaaactagacactcgtagctatggctaatattaaaacggctggaactggacagtattcactcttaatagtggtactgatcagtacgattggtaaaggacttagaaagcgctcttacccaacaattatccacgcaaaactgtaaataaatcttttttttctacaaacttcagtcaaaagaacatgtacatttgataaaaagcttatacaaatttgcttcttgaaaattgcgctttaattgggattccttatctgtataaaaatattttctttgctaatggcaacaagccatagctctactgaccaaacgaaattttccaaacaaatggtaccaacatactgatcagcgcacttccagagttttgtccagtccaacgacatagtttagcttggcttcaaatttattcgatcccgttgattttgggccacccattgggttcctttttaatgtacaaatcttatacataagtgcagtaaatgtcggcttgtatataaaaacatataacttggcttgtgattgcgttttgttacattttccttacttctaaatgtatcataattattaaactctgtaaataaaactctctaaggcaactatagacattaatgcgcattttgtttgtgtgttgtttactcgtctgcgttggttgtggttgtatggttatggggtaaagtcgaactccacaatccggcttttgtgctttgtgtccacgtccagtgagcgtcaccattaccattcaccattataatcgaaaaaaccatgagtgagcttgagtcatcagttcttacttatacaaatgtgacagtggacatgaatagtccaagtgtcttacaagggcatttaaacgctatcttgattagaataaattaattttttcaatagatagacgcaccacaggcgattttattgttattttattaaacctgccagatgattataacatgttttatataaagttctggagccttccacaatttctatttaaagaaagctaatgcagttatttagtaaaaattttttgaatgatttattgcattaatttaaatgcatgatttcaaagtgtatttaaaatgcttaagaggaccactaaagatctttatttcctttatgaagaatttttatagcaccataaaattagattatcaggaagcttatttatgagccaatttccttaccttttcgtttatatttcctctaaggaatttccctttacaaaaaatgtgctaatactttaccacgaataaattgtttgggccaaggctacaaaggtaatccgccaaaaatttaaataaaaccatccgcacccacccgcactaaattgtatttttatttaacaaaattttgaagaatattcccgtccaaccattttttagtacgcagatccatgtcgtgtcgtctttagtcagtaactaaatgggtgctaaacaaattttcgccgcgaggcctgagtttttcgaagcgtggccaaccccatacgctatcagttgtcggcagaagtttaaaacaaataccaaatgataaatgaaataaaacgggatcgtaaataatcgccgccgttcttatcgcgagggcatatcttcgggtgcagcataccagtactaccactggtcgcagtttatatttataaaagcttaccagtaaagcacctttcgataagtggcactcagattacaggtgtcgaaataattaatacggcagaattataaactctgtgctagtacctggtataagagatcgaaactagggagagtgaatctagcttgtataggtgtttgaaactttgtttaccctgtaaataaacatattatcatatactactttcag
    number: 5
    contig: 1
  - type: exon
    nucl_start: 2946
    nucl_end: 3156
    dna_start: 7685762
    dna_end: 7685972
    prot_start: 982
    prot_end: 1052
    seqshifts: []

    mismatchlist: []

    translation: AALRKLNNISSGDTIRLPKSVPNNIDTSDFSYLKYAATYFGGGATAQHERKPLKKSLLKHEHPIDEMASK
    seq: gcagccttgaggaaacttaacaacatctcttctggagatacaatacgtctacctaaatcggtgccaaataacatcgacacctccgatttcagttatttgaaatatgcggctacttacttcggcggtggcgccactgcacagcacgaaagaaagcctctgaagaaatctttgttaaaacatgaacatcccattgatgagatggcctctaag
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 6
    contig: 1
  - type: intron
    nucl_start: 3156
    dna_start: 7685972
    dna_end: 7686026
    seq: gtaagtccttgaaaagtgagtacatataaaagtataattaacatttaattgtag
    number: 6
    contig: 1
  - type: exon
    nucl_start: 3156
    nucl_end: 3455
    dna_start: 7686026
    dna_end: 7686325
    prot_start: 1052
    prot_end: 1152
    seqshifts: []

    mismatchlist: []

    translation: AIWLTILRFMGDLPDVVSSPTLHVFDNENLMSDLASLLNTSDSYKPRLFVRQSQRRIPKPLASGEKEAQEFYQHWLNVPTSHLEKIHFIIGHGIIKNSLR
    seq: gccatttggttgactatactccgctttatgggcgacttgccggatgttgtttcctcgcctactcttcacgtattcgataatgaaaacttgatgagtgatttggcaagcctcttgaacacttctgattcctataagcctcgcttatttgtgcgccaatcccaaagacgtatcccaaagcctttggctagtggtgagaaggaagcccaggaattctatcaacactggctcaacgttcccacaagtcacctggagaaaattcacttcatcataggtcatggtataataaagaatagcttacg
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 7
    contig: 1
  - type: intron
    nucl_start: 3455
    dna_start: 7686325
    dna_end: 7686387
    seq: gtatgttatgacaagaagacaggacatttctttgcatcaaaccaaacaattcattattgcag
    number: 7
    contig: 1
  - type: exon
    nucl_start: 3455
    nucl_end: 4991
    dna_start: 7686387
    dna_end: 7687923
    prot_start: 1152
    prot_end: 1664
    seqshifts: []

    mismatchlist: []

    translation: DEILAQICKQLYLNPSRSSYSRGWLLLSLCLSCFPPSKEFEPHLRSFMKQGTAQLQATPSLQRLERTLVNGPRCQPPSLFELHAIRGRHPLRLDIHLMDGQQRRLQVDAASTAREAVNQLCQGMGLTDTFGFGLVMSLNGKLMPLGAGQEHVLDAISECEQRQLDAPWKLYIRKEMFATWYDPSMDPKATQLIYKQILNGLKCGEYRCRSEKDIAMVCALACFVEYGPGEILRLKPSEITAFVPSDLLAPGERAIENWSRLIAATYEKSSYVKEEQNDLLLEAQKRAKEDICLFAHLSWPMRHSRLFEVVRKEGPKLQSDELMLGINSAGLFLIDETEQVLASCCFSEVLKVHVESDDKLHVMTFQHVNFVLQCSSAQDANEVINYMLDNLRQRSSYGVALDPVVEGDLEDCLVLNPGDLIEFEAGVTGAQLMAGNAQDCYRGCVNGQWGQFLAGNVRVLATLTKPSEKLQDILREGRFQEPPKPTPRANYSRRRQHNISQLAESHFREPLD
    seq: agacgaaatcttggcccagatctgcaagcagctatatcttaacccaagtcggagctcctactcccgcggatggttgctcctttcgctatgcctcagctgctttccacccagcaaggagtttgagccacacttgcgcagtttcatgaagcagggaactgcccaactgcaggccactccatccctgcagcgattggagcgaaccctggtcaatggaccacgctgtcagccaccttcgttatttgagctccacgcaatccgcggtcgccacccgcttaggttggacattcacctgatggatgggcagcagagaagattgcaggtggatgcggccagtacagctcgagaggcagtcaatcaactttgtcagggtatggggctaaccgacacctttggctttggattggtgatgtcattgaatgggaagctaatgccgctgggagcaggtcaggagcatgtcctggatgccatttcggagtgcgagcaacgtcagctggatgcaccttggaaactatacatccgaaaggaaatgtttgccacttggtatgatccctcgatggatcccaaggccactcaacttatatacaagcaaattctaaacgggttgaagtgcggagagtatcgatgtcgctccgagaaggacatagcaatggtgtgtgctctggcctgctttgtagaatatggacctggggagattcttcgattgaagccatcggagatcactgcatttgtcccaagtgatcttctagctcccggcgagcgagccattgagaactggagtcgcctaatagctgccacctacgagaagagctcttatgtcaaagaagaacagaatgacctgctattggaggcgcagaagagagccaaggaggatatatgtctgtttgcacatctctcctggcctatgaggcactcccgactgtttgaagtggttcgcaaagagggaccaaaactccaaagcgatgaacttatgctgggcattaattccgcgggccttttccttatcgacgaaaccgaacaggtgctggcatcctgttgttttagcgaggtgctgaaagtgcacgtggaatcagatgataaactgcatgttatgaccttccaacacgtcaattttgtgctgcagtgcagctctgctcaggatgccaacgaggtgataaactatatgctggataatctccgacagcgttcaagctatggcgtagctcttgatccggtcgtagagggggatctagaggattgtctagtgctaaaccccggtgacctaatcgaattcgaggcaggtgtaacaggtgcccagttaatggctggtaatgcacaagactgctacaggggatgtgtcaatggccagtggggtcagtttttagctggaaatgttcgcgttttggccacgctcaccaagccgagtgaaaaacttcaagatatcctccgagaaggccgatttcaagaacccccgaaaccaactccaagagccaattactctcgtcgtcgtcaacacaatatctctcagctggctgagagccactttagggagccattgga
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 8
    contig: 1
  - type: intron
    nucl_start: 4991
    dna_start: 7687923
    dna_end: 7687973
    seq: gtaagtaaaccaagttaatatggcatttaattcaaacattatttttttag
    number: 8
    contig: 1
  - type: exon
    nucl_start: 4991
    nucl_end: 5115
    dna_start: 7687973
    dna_end: 7688097
    prot_start: 1664
    prot_end: 1705
    seqshifts: []

    mismatchlist: []

    translation: SDKAPLSKFSPEPLKAPLLKAVVKVPPLFQQALVMHHHILK
    seq: ctccgataaggcaccactatcaaagttttcacctgagcctctgaaagccccgctgctcaaagctgttgttaaggtaccgccacttttccagcaggcattggttatgcatcatcatattcttaag
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 9
    contig: 1
  - type: intron
    nucl_start: 5115
    dna_start: 7688097
    dna_end: 7688164
    seq: gtaggatatgggatgaatagaagatacatcttatagttcttacaaccaatacgttctgaacatatag
    number: 9
    contig: 1
  - type: exon
    nucl_start: 5115
    nucl_end: 6363
    dna_start: 7688164
    dna_end: 7689412
    prot_start: 1705
    prot_end: 2121
    seqshifts: []

    mismatchlist: []

    translation: YMGDIARSNLPVNTDLIFQPALQHPLLCDELYCQLMKQLSDNPSSESEKRGWDLLYLATGLVAPSVLVMRELIILLRMRADALADACLKRLKRSLAQGQRKKAPHLIEVEGIQQRCLHIYHKIYFPDDTVEAFEIESHTRGAELIADIAQRLELKSPVGYSIFLKTGDRVYAMPEEEFVFDFITQLIYWLRQQRTIRSISDGQYQLHFMRKLWLNNHPGEDLNGDMIFSYPQELHKYLKGYYPIDCEQASRLAILVYSADHDVSLQRLPEVLTRLIPEDLIPLQTVAEWRQQILPKVHRDHLTEDHAKILFLQELSHFACFGSTFFVVKQQNDDALPETLLIAINSTGFHMLDPTTKEILRSYEYSQLGIWSSGKNHFHIRFGNMIGASKLLCSTTQGYKMDDLLASYVKYFNEHE
    seq: tacatgggtgacatagcaaggagcaatctaccggtcaacacggacctcattttccagccagcactgcagcatccgctgttgtgtgacgaactctactgccagctgatgaagcaactgagcgataatccctccagtgaaagcgagaagcggggctgggacctgctttacttggccacgggcttggtggctcccagtgtcttggtcatgagggagctgatcatactactgcgcatgcgtgcagacgccctggccgatgcttgcctgaagcgactgaagcgatccttggcacagggccagcgaaaaaaggcaccacatctcatagaggtcgagggaattcaacagcgatgcctgcatatctaccacaagatatatttccccgacgatacggttgaggctttcgagattgaatcacacacccggggagcagagctcatagcggacatagcccagagattggagctcaaatcacctgtgggttatagtattttcttgaagacaggcgacagggtctatgctatgccggaagaggagttcgtttttgatttcatcacccaactcatctactggctaagacagcagaggaccatacgctccatatccgatggccaataccaactgcacttcatgagaaagttatggttaaacaaccatccaggcgaagacctcaatggagatatgatctttagctatccccaagagctgcacaaatacttgaagggctactatcccatcgattgcgagcaggcctcgcgtttggcaattcttgtgtacagtgcagatcatgacgttagcttgcagcggctgcccgaagtgctgacacgtttaattcctgaagacctaataccgcttcaaacggtggccgaatggaggcagcagatcctgcccaaggtccaccgcgatcatttaacggaagatcacgccaagattttgttccttcaagagctgtcccatttcgcttgcttcggttccacattctttgtggtgaagcaacaaaatgacgatgcccttcccgaaactcttttaatcgcaattaacagcacaggtttccatatgctggatccgacaactaaggagatccttcgcagctatgaatactcccagttgggtatttggagctcgggtaagaaccacttccacattcgttttggtaacatgatcggagcatcgaagctgctgtgcagcaccacccaaggatacaaaatggacgatttgctggcctcttatgttaagtattttaatgaacacgaa
    undeterminedlist: []

    overlap: 
    inframe_stopcodons: []

    number: 10
    contig: 1
  stopcodon: taa
  downstream: taaatcataaattcgggataaataaatcgtgctcttacaagtagcccaactccttggtcttttcaattaaagccagcattccaaccattagctcctcgcagttgggaatgatctgcactggtggcaggataaagccgtagcgacccttatcacggtactcgattgtgtaaccgatcttcttgcccagctcgttgaacacccagtccacggaggttccagtggccacatctgttttaaaatgtcataaatatttagtaggcataatttagcatgctagttattttagttttattaaggcaatacttacaaagcacatcagctgtagagccatactggtagacggttccgtacggcagtgcttcaatggcatcggcaaaagctttgccaatagtcaggatatcattgtaattttctgggaactcctcattggtatgaccgtagggcgaaagcaaatactgtccatatgagtggaaggatatgtacacactaatttggtcctggattttggtcaagtactcgaccaaggccttggcttcaggctcagattcagggttatccccagcaaaagtctcactgcagggattgtcagaggctccattgttctggagccaataggagtcgaagttcctattggcgtcagctccaatgcatgcattcgtggcatgtggctgacgtgttttgcgccacatacgatcctgttattgcataatgatttaaatatataaatagatgtcaaaatcagtgaaagcattcactcaccttcttgtgtgagtactcaaaaccatctacattgaacacgggaattatatgccaatcatagttatcggccaaacttcgcacatcggcatcctctgaggtcaaaagctgattgatgaaccatgtagcactggccgaagttatccattctctggcatgaatgttggactcgatgaaaatgccaggattgccagccttgtgggagatcttaatgcctctaatggttctcccctcgtaggacttgccaacaatgaactcctcggtcaccgagggataagcatttagaatctcgtccagccaggcctcaatctcttccagctcgtagtacttcgtccagccgaaggtggcgctatctgcagtcggcgtgacttgctcctcgtcgatacgcctgaatgggaatccaatcgttaactttatggtcttaaatgagcacgcactaatggttagctaatcgagcgatcttatcgactcgagtggcattaacccgtacgctgtgccgcattccactacttactcttggacattctcgatcataagctcactgctgatattattgaatttaagcagctcctgaaagtggttaagttctccaggactaaccataatatcaatctgcctacttcgctcgtcatactccttccaaatattgtactaaacacaaaagaattgattgggttacgtcatctgatctgtggtattaaacaactaaccttcttcgttagctcgccaattttctcgatcgcagccaattgaattttgttctggatagtgagcttgtataccctgaagttatcataacgctctttgggagagtccttaaggataccagcacttgttagagccaccagcgtggcaagcaaccaaagcagacgcattttgagcaatgactaaaattctgctgacggcctcgtgcttaagaaacataacacgttgattatctgcagttaatctttattgttttattgcacattgaatttccccagcacttacagcgcgctcttaagcccgagatagccgaggtctttacacttttctaatagggcagcaatgccgattagtgcctcctctgcgtttggaataatgtgcaccggtggcaggataaaaccatatcgaccggtgtccctaaattcaatggtatacgatatctccactccttgttcattgtatgcccaatcgatggtggctccagacgcgggatctgtgataacaatttaagtttacatacatgcaaataaaatatattg
  downstream_gap: 
  number: 1