### Scipio v1.4 (20100617-unreleased) output
# query file    /tmp/hOgQKjBAzdVe.fasta
# target file   /genomes/genomes_ucsc/Homo_sapiens_v18_chromosome.fasta
# BLAT output   /tmp/wGU0DZ7TZSfK.psl
# Timestamp     Thu Jun 17 17:29:02 2010

--- 
HsP50__fl: 
- matchings: 
  - overlap: 
    mismatchlist: []

    prot_start: 0
    nucl_end: 36
    prot_end: 12
    translation: MADPKYADLPGI
    dna_start: -56227113
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 0
    seq: atggcggaccctaaatacgccgaccttcccggcatt
    inframe_stopcodons: []

    dna_end: -56227077
  - dna_start: -56227077
    type: intron
    nucl_start: 36
    seq: gtgagtacaggaccggccccggctccccaggaccgcgcccccgacctcccaaggacccccagcagaaaccagcccgcgacccctcccgcctgcagcccatcctccgcccaagggctcccgccgctcgttctccgatcggcctcagcaccccccgaactcttctgacccgactgggccgggccgccggacggcgcaccaggccccctttccggcagtcgccggtagctcggcccagaaatcgactccgggtactgacctcttgtgcctgagtttttccaccatccgtgtcaacgcctcccatgtcccccccaaatctctccataagaccccatcgctaccccagacacacacaccagaccacttaacgatggccttcatcctgccaaggaagaggttctgccatctggcagaaccctcttgtgccagatggggagctctatccttgagggaacctatgccctcccccagcccccactcccatgacaatcctggcgtgtaccttccttttgtgctgccctgcctgcttctcaaggtgagggttgggacacaggaccttgagtactaaggtcctgagtcactctcaatccttgtgccagggtggtggtgtacggggcctaattggaggatagccttcaccttctttggcaatagtgattgccaaggacctgcccgcctctagatttagggtaacatcgttgctatcacttacactcaccgtttactgtcaggtcccaattgtttccgctgtcatccctaccccttgagacatgggaactgacatactgttgactcacggggcaggtggaggagaaaggacagaaccctgacatcacaccccgccttctctgttagcttattcaaatggagtgggggaaggggtgttgttggatgctgggtagtgaggttgggtggtcactgcttctacctgcag
    dna_end: -56226146
  - overlap: 
    mismatchlist: []

    prot_start: 12
    nucl_end: 105
    prot_end: 35
    translation: ARNEPDVYETSDLPEDDQAEFDA
    dna_start: -56226146
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 36
    seq: gccaggaatgagccagatgtttatgaaactagcgacctacctgaggatgatcaagcggagttcgatgcg
    inframe_stopcodons: []

    dna_end: -56226077
  - dna_start: -56226077
    type: intron
    nucl_start: 105
    seq: gtaagaatgtgtgctgccacagactcctccggactctgacctttctcccctagacaggtccttccctttctcgggggagctacagcaataagcgggtatgccaaccccagcctgggtggtatataggttgcagggcttgcaaagaccttgctgggcttgcagccaccaatgagcaatggcaggagggagagtcaagtcagcggaattacagctaacaacatctgtttgcaaagccctgattcttgggccttttaaataaaattgaaatatctcaaaacaggtttggagctagtgacttaggcccctgggttctaacccatggaaatgaatcatgaagcctgggcacttgtaataaactgctaccaagaactagactttgaaatatggagaaatactttttccatatgaatatccagtatccattgggcaaggaattaagaaagtgattccaagattttagagcaaaacaaatttgaggaagaatgtaaatatttcacatcagcggatgtgagactgtggttgcatttttagatccgagaattctgaggatggagtaattaggtacggatacattttaactgtgaggggaaacatttagtatggtttattgagtgtgttcattctgtggttttttttgtgcaatgcagaggaagaaatgtctctgcccccaatgagccccagactaatggggaattaggatacatataggaaacatatagaaggaaaaaaaaattgagtgaatggaaatcaacatagtaaaaactctgtttaagtgccaagaggtgtgtttataggatgtgttttaggttctattatttctgaagacagctgggctgggatcacattgatgatgtgagttctcagtaaagatgtgtccaagagtcattgcaatatgcaggctcagtatgcttgtctgtaagtcctgtggctatgtctgtggggctggttaattctggggaatgctgactgctggcttacaatgtgtggcttggcgtactcacttatttcttatttgactcccccatgtggaagtggttcttacattgtgggaaacaccttctctgtcccttctcccagtggtgtgttccttgtggcttctgtatttgctggcatgccaatctatcccctaagcttgagtatcttggagataatgcagatgatgttgttgctcaaggacctgggtgtgcacctgtcactccaagaggcatcttataggaagctgcctctgtcctcacagaataggagtgtatacaatcggttctctgtatttatgggttccaaacccatggattcaaccaatcacaaatggaaaatattttttaaaaataaaaaataggcccagtgtggtgattcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcatttgaggccaggagtttgagaccccgtctctactaaaaaatataaaaattagcaaggcgtggtggcgagcgcttatagtcccagctactgtggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcgccactgcaccccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaccagtacaacaataaaaaaaaaaacaaaatttaaaaatacaatataacaactatttacatagcatttacattgtactaggtattttaagtaatctagagatgattcaaagtatacaggagggtgtaggtaggttatatgcagttactatgccaatttatatagaagatgggaacatatgcagattttggtatcaagggaggtcctggaaccagtctcccacagttgccaagagacagctgtatgctgagaactttactgcactaccacagttcagactgttcaacttaggcctaggcttctgcccttcatggtgagataatgaatagaactcagtccttttgtcgctgtgatacaaacaggtagtttcacagtaatcctctttctaaacaaaaaaatacatattgtcattcccttttgaagatactgggatatctcttaataaaaaggagatgacacccattccaggtgtggaagaacctgactgtgcagctctgattggctgtttctcccccagagcctgaacagcctattttagtagcatctagtggggtggctgatgaggagaggatactgtgagtgttcatttcctgtggcatgttgcccaggatgccagtatagaagtgcatatgagctgaatggcaaatacaagaagagctgaattgtttctgtcacctaaggctcagctaagtgactctctgtcactagggaggaatggggtgggcagaccttcagccacttcaggggcccgaagagccaagatgtttcctgatgtcagctaatgtctctggcccccgcatgtccctatggggcttgcagcttttgggaagtcagctgagtaatggctctgccactgcttttaatactgacgtaaatatgcaatttgaggagcagtgaattgtatgcttagataatctagaaatgtcatgtccgtgaggcctgggatctcaccagcagcctgtctgtttcctgcctacctgcccaagacctagtacaagtgacagtgcacatgacctgtcttgtggctgaaccatgagattttcagtcaccttctttttttttcttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcgagctccacctcccgggttcacgccattctcctgccttagcctcccgagtagctgagactgtaggcgcccaccaccacacccggctaattttcttgtatttttagtagagacggggtttcatgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgtcttggcctcccaaagtgctgggattacagacgtgagccaccatgcccagcctcagtcaccttcttaacccctgacaacagcattctccgccttaatcttcagtttattttcaactttaattttatcagtttttaaagtaggtaatgtatgcacagggaacagaggattcaagggtaagtagtgaaaaatctgcctcccacctctgcctaccaccactcagttctcttccctagagacaaccaatatggatagactcttgtggaacctttcagggggtctccagatttctttttggtttttgagacagagtctcactctttcccccaggctggagtgcagtggcacaatcttgtctcactgcaacctttgcctccccggttcaagcgattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccacacctggctaattttctgtatttttagtagagatggggtttcaccatgttggccaggttggtctcgaactcctggcctcaagtgatccatccatcttggcctcccaaagtgctgggattacaggcgtgagctaccatgccagccgggtctccagatttctgtctaaaggaatagtcaagttgtgttgaccctcactgctccataactttcttcctgtgattcctccactgtggaagaaattgggctactaaaggaaaaatgtcctcaaacatcccttaaagatttaaattgctaatttaacttaaacataaacattttccgattcccatagtggggaggatgggggaggaaagcataaaagatttaaattttgctacagatgatcgtgaatttttttttttttcaagatggagtttcactctttttgcccaggctggagtgcaatggcgtgatctcagctcactgtaacctccacctcccgagttcaagagattctcctgcctcagcctcctgagtagctggaattacaggtgtccatcaccacacccggctaattttttgtatttctagtagagacagggtttcaccatgttggctaggctggtctcaaacccctgacctcaggtgatccactcacctaggcctcccagagtgctgggattacaagcatgagccactgtgcctggccaatcctgatttttctactatccctttaaaacaattttagcaggaagtaaaatcttctaaaacaggaatggaccaggaaagtgcacgggctgtagccctttcctcctcaatctgggaagatctctttgcacttcagacactcccaggttaattggggcaataggcttgcttggagatttttcttaaaatgtttggaaaactaattcccaaatagaattccacccacacacacaccccgaccctaacccctgggcccacagcctgccttgggtcagtgaggctttctgctcatggcttttgaactgctggaataagggaagtaaattaagaaaaacctcattagaaacaatttagcttctctctttatggcataactacccgcagtaaaaggggaaaaaatgacctagccatagtttgatggggccctggcagaggcttcatttctccaaaaggtagatattactggacactcctgagatgagaaacagtacttccttacagtttagaagatcctggagtatgcttgattgtgttcattgactgttggcgcacttgaacttacctgagtttttcctaatgcttcccccatcctccctcctcaccaccttgcctggacactag
    dna_end: -56221422
  - overlap: 
    mismatchlist: []

    prot_start: 35
    nucl_end: 114
    prot_end: 38
    translation: FAQ
    dna_start: -56221422
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 105
    seq: tttgcacaa
    inframe_stopcodons: []

    dna_end: -56221413
  - dna_start: -56221413
    type: intron
    nucl_start: 114
    seq: gtaagaccattcaatgcttcttctctgcatgtttttttcatctgccatctcgcatgcaatgctctgccactgtgctattgttgtagctaatcgttttaaattccagtgagtccctggctgggtcactgaggggcctgctggccttatgtttaaagatcattaatcaagggttagaaacagctatgatccatgaatcattgtctcttccccttgtgaggtctgcagagtaaaactgtccagtggaggatgggatagaagcatggaggctttaaatgtttttgaacatgaggcatttaggggctggagttagaaggcagtttcctttctcctcctcagactaagatcaaatgaagatttttttatggaatgacttttagctattctagacaaggatagaaaacaaaagggatgacagccacagtcctcagttcttggctgtatgtggattatctctgggaaaaactcattttaatattcccctatgctaggtctttagagaaatgtaaatgggatgagaaggaggtttatatgcaattgtaagataacttggattatttgtgcttttgtgagtctttctgtttctgcacccctccttttgaaatggatggatggtcagcaatatattgatccatcccggacagttttactctacagctctgtccatcttccttgtcatcatggttttgaagtaccctggctgcagtgttggcgtacagcctgaataggctcagagagtaacagtggccactttccctgtctgatttagaacctcagatcttgccctctgaggcacagccacttagccaaacagccctggggggtctgggagtcccttagtgaaagagactgggagtcacgtactaggtaagctggcacccggggccagggcacttgaaatcttccaatcaaggtgactagtactactccaggttatgcaggaatcatgcctaaaatctcatcaaccttcaacccacccataggacagacctggaggtggtatatactatctgcaaactaatataccacttttccttttatttgattttctgtcctccctattctgcccaatccgcatggtttgaaattgagcttatggcccattgtcttctttctctccttgagtttctcccaagctggttttagcttggtgggacaaatcagagaaaggtatagtgtgtgtacttctcctttgtgtttgcatgtttgcacttatgggtgcttacacccactctatgcagagacatcccagcctcgaccacaggatctggagccacctctaccctgagctgaaagaggaattttttttttttttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctgccgggttcaactgcaacctccacctcccgggttcaaatgattctcctgcctcagcctcccgagtagctgggattacaggcgtccaccaccatgcctggctaattttgtatttttagtagagatggggtttcaccatggtggccaggctggtctcgaactcctgacctcaagtgatccacccacctcgccctcccaaagtgctgggattacagatgtgagacaccgtgcctggtggaaagaggaatcttggctgggaccctagcatcgtctagggaacagagaggttgtgattaagaggtatctggatgaaatcttggtgaaaggaagcacttgtttttaatcccaccatggtttttcatatgcatacaaccatcctcaaccatctgcccatcagcagagctcctagaaaggcaggacataccactggatatccccttctggcagttctaaaccagccttgcccggaagtgggagccttatctatgtggcccagactcaaataaggcctcttggaaatactctcacccttcccctttgtttaccctccaacccctgtgaatcttgtgaacagagggttgaagaaacatgttctgcacatgtgctagtacctgtgaatcttgatgtcccctggaccctctgtgtaagtacatcatggcagaattgctctagatccttcggagctgcagggtgagttaccagccactcaaggtggaggcaaacatgccaggctgcacaagggaccaggagcagctctgcctcttcccttgcaggaggaaatgagaacggggctatacttaggtacttcatcattcctttaactcaccatctgtacctgacatattttgttttgtctcacctaaagtcatatcagacttcctacctgatcactctcattgtgactgattctgccatccaaatgtctaatttttcacagctagagaaactaagagataggaagacaagggccatgaactaagaaggggaactcctctcctgagaattattgaccctctatcagctacaagtctaagaatttctaacttctgcttcatcttctaccatttctaatagcttccccaccacctcagccttctctccccagtttcttattccatgccactggctggtaacatctaactcctagttttcagatgatcctaaactgctgctgttaatggcaaagcttcatgacatcctcaccaccagagggaaaagggtctcatgctcttctttctcttggggtatatggtgaccccagctgaaatttcttggcccctaaatttcgctaggctcccctggggccctgtggtgcagtgtgttggaagactgtcatgtagtgcatgtgacaatttgctaataacaattttgtcttttttttccctccctcatccccattcccccactccctttccttttaactcttttgattttctcacctctggggaaaccacaag
    dna_end: -56218574
  - overlap: 
    mismatchlist: []

    prot_start: 38
    nucl_end: 120
    prot_end: 40
    translation: EL
    dna_start: -56218574
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 114
    seq: gagctg
    inframe_stopcodons: []

    dna_end: -56218568
  - dna_start: -56218568
    type: intron
    nucl_start: 120
    seq: gtaagaagcctgacctttcatctgctttttaacggggtgtgctatgatgagcagttgtttctctgtcctttagactctactaaatctttcattcatctattcagtcccacacccagccttttcctatctcacaagtcactgtaattatactgcccccaactcatgccccagatcttcaagacactgctggagtaggtgctactggaggactagagtgtgctcccgggccacagccttggagaggctccagaggatgccagcgccaggtagcccaactggcccaggacactctcccacagcaggaatgaaaatgctctctgtccctgtgactgtccagaacctctgagactcaccgtctatgtgttgaccctcttctactccccgctttccctacttaggaacgtaaataagaaagtaggttccatctgcatagtgcccgcccataataagggcttaacaaatggtagctatgattaatttttttcctgggtctgtaggttatgcctcccattcctcttttttaagaggattaaacaaaagaggatgggtgggattggcctggattggggctttcacagggagaagtggcatattcctgagtatgaacttcagagaagatggttgtctatccttagcctgagcccttcccagttgataagaggccagagatcacacagctattagatgggtgggtgttctggccgtaacatttcagaacaggttaaagagataatcatttgggactcaaatgtctctccccccgggcacttgcatatgggacattgagtccttttgttttcccttgatctatagctcttacccctctgcccagtaattccctgaggaagaggtaaagatcaaagttgatactttgtcctttccttccttcttcccttatttttaaagctgtcacccacactgattcctgctctaatagcagagcagagatgaaggaaggagcttccttctatctgcttttctttctcaatgatgtcccaccatgtccccctcacaccctctccccacatacctacacacaggcagagattctcagtcctggctgtaggttagaatcacctggatatctggccctaccccagaataattcattagaatctctagaagtgggcccaggcctttttttttttttttttttcttttctctctctctctttttctttttttgagacagggtctcactctgttgcccaggctggagtgcagtggcatgatctctgctcactgcatcctccacctgccaggctcaagtgacccttccacctcagcctcctgagtagctgggaccacaggcacgtgccacaatacccagctattttatattttttgtagagttggggtttccctatgttgcccaggctggtcttgaactcctgagatccacccgccttggccgaactttgggaggccgaggcgggtggatcacttggaattaggatcctcccaaagtgctgggactacagacaggcttgagccaccattgcccggctgtctatttaaaaaaaaaaaaaaattataagtgattctaacatgcagcctggggtgagaaccattgttctaggtgaaagaaggaaggctcattttgccttcctcccatagaaggtagagatgtcatccccaacagaaaaggactcctgggtctccctcctacttccatcagtactctgttgggagctgtcaggcttctgacaattgaaaaagggacatgcagtcaggagtgcttggtgcagtcttggtgttgtcactggaatctgaacagcatgtagatatctagtaaggagggaacctctctgcttcagtttctagggtgaagtctctttcaccgcctacttgtgtcccctgtttttggaagagcttcagtgcttaaagcatagcagaggagtcagggagaaaaatcaggtgctgcagcgtctctgaagagatgctggtttatctccatttcagagcttacatgtggctcttgcccatggatactcttggcaagcagatattgcctatgtttgttgcttctaagatgtcccataaagataatccagtaagcccttgccccttctccctgtccctgagttcgctggcctcatggcagcctggaaatcaggcttctggtcaggccctctgtcggccttctttttgtactaagagcttgtgtcttaccttcaacaggtttaaagtcctaatattcacactcagtgttagtggcctgattatctgccttccctcctctttccttctagcaaggatgggaggttagcattaaaatggacttgctcagcgggcaagatttacttttgggagggggaggttaaaagaggtcaggttggtttcttgccttgagtgcatggcgtgtgccagacaactgggaggggtagcatggggggatgggaaggcttatgtacagagagggtggggaggttatgctccctctgctcccagttgaatgagggtgttaatatttatacaactgaggctccaaatttaccaggaagcttcagtttcctaggttaagcctgggtaggcgccttggaatagagccacccttctttccccttggacaagtagggcccagtcacctaatggtttggggattttgtggggtagagtaagttctagagtgggaatgagtgtgtccctggcctaaactacctgttcttgcag
    dna_end: -56215895
  - overlap: 
    mismatchlist: []

    prot_start: 40
    nucl_end: 217
    prot_end: 72
    translation: EELTSTSVEHIIVNPNAAYDKFKDKRVGTKGL
    dna_start: -56215895
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 120
    seq: gaggagctgacaagcacaagtgtggaacacatcattgtcaatcctaatgctgcctatgacaagttcaaggacaagagagtggggacaaagggacttg
    inframe_stopcodons: []

    dna_end: -56215798
  - dna_start: -56215798
    type: intron
    nucl_start: 217
    seq: gtgagactgggctggaagctgggtggggggaagactggaggataagcatgagaagtggtttcctgtcctaaagtcttagtgagttgtgcttgggggaaggggtccctcatggagatattttatggaagccctcacagtcacctgagaccatgactgccttgggcctagatcaggccctcagttccatcttcttttcttggcag
    dna_end: -56215595
  - overlap: 
    mismatchlist: []

    prot_start: 72
    nucl_end: 279
    prot_end: 93
    translation: DFSDRIGKTKRTGYESGEYEM
    dna_start: -56215595
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 217
    seq: atttctcagatcgtattggaaaaaccaagaggacaggatatgaatctggagaatatgagatg
    inframe_stopcodons: []

    dna_end: -56215533
  - dna_start: -56215533
    type: intron
    nucl_start: 279
    seq: gtttgttgtgtgtgtgtgtgtgttgatgggaatggtgtagtgaccctatctagcagacatgtagtagggagatcaagggatacaggcgggattctgttcctcctctgttcctgaggaagcagcaggatgcagccagggaaactctgccctactgctgtttgttctggagagcctccagccctctagctgtcctcagttctttggtactagggtgttgtggattctcaattggatatgatacctttatgacttaggcccagggtgtggatgaattcttgaggctccctgtaatgagacatataacattaccctctgtgcctgctctctag
    dna_end: -56215204
  - overlap: 
    mismatchlist: []

    prot_start: 93
    nucl_end: 378
    prot_end: 126
    translation: LGEGLGVKETPQQKYQRLLHEVQELTTEVEKIK
    dna_start: -56215204
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 279
    seq: cttggagagggtctgggagtgaaggagacaccccagcaaaagtaccagcgcctactgcatgaggtccaagagctgacaactgaagttgaaaaaatcaag
    inframe_stopcodons: []

    dna_end: -56215105
  - dna_start: -56215105
    type: intron
    nucl_start: 378
    seq: gtaactacaaactctcttctcccttctctgctgtgacttacacagtagaggaagacctcaagcaagaagagaaagattccctgcctggctgggtgcggtggctcacgcctataatcctaccactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagccaggccaacatgatgaaaccccatctgtactaaaaaaatacaaaaacttagccaggtgtggtggcgcatacctgtaatcccagctactcgggaggctaaggcaggagaattgcttgaactcggaggcggaggttgcagtgagcccagatcatgccactgcactccaacctgggtgacagagcgagactccatctcaaaaaatgaaagaaagaaagattccttaagctcctggataaaggggctaaggtttccagagtttacaaatatgcatccatctgtatgcagtgctacatacaggtgggcagtctgtcatgctgaaaaccatcccagtgacctccagctacaactacctttaaagggcttgacctatttttttgcttcttgattcattcttgccatcccccgatttctaccttttttcatactag
    dna_end: -56214502
  - overlap: 
    mismatchlist: []

    prot_start: 126
    nucl_end: 539
    prot_end: 180
    translation: TTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK
    dna_start: -56214502
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 378
    seq: acgacagtgaaggagtcagccacagaggagaagctgacccctgtgttgctggctaaacagctggcagccctgaagcagcagctggttgcttcccacctggagaagctgctgggaccagatgctgcaatcaaccttaccgaccccgatggcgccctggctaa
    inframe_stopcodons: []

    dna_end: -56214341
  - dna_start: -56214341
    type: intron
    nucl_start: 539
    seq: gtgggtaccctactttgttgaaaaatcattgctgactggggttgtggatggactcagccagctactgacaggggtgctaagtggcagagaagtggcttagatgtttcttaatgctgattatgaggcaaaagtgagggagagtgactggcccttctccttccagtcatgatattattactcggtctcctaactag
    dna_end: -56214147
  - overlap: 
    mismatchlist: []

    prot_start: 180
    nucl_end: 684
    prot_end: 228
    translation: RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAK
    dna_start: -56214147
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 539
    seq: gcgcctactactgcagctggaagcaacaaagaacagcaaagggggatcagggggaaaaaccactgggacccccccagatagcagccttgtcacttatgaactacattctcggcctgagcaggacaagttctctcaagctgccaaa
    inframe_stopcodons: []

    dna_end: -56214002
  - dna_start: -56214002
    type: intron
    nucl_start: 684
    seq: gtaagtgtggatacagtgttggttgggaagccaaggggagatgtgaccctagagattttcctgcctctctccaaggagagggtgctgggaaggcttctgattcctctgattcctcttgattgattcctcttttgattcctgattcgttgttctctatgtttctttcttttttttttttttttgagacggagtcttgcactgtttcccaggctggagtgcagtggcgcaatcttggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctcattttttgtatttttggtagagatggggtttcaccatgttagccagaatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagcactgggattacaggcgtgagccaccgcgcccgacctcattctctatgtttccctcgcccatctacctttggttaggattttaagattgtggctaggtatgtattccagggaaaggaatcccttggggtggtgagtggcaggcagagtagagcaggatcgtattcctcccattgcagcagcagggaagcagatggcaaatctcacctccttcctcccactag
    dna_end: -56213353
  - overlap: 
    mismatchlist: []

    prot_start: 228
    nucl_end: 750
    prot_end: 250
    translation: VAELEKRLTELETAVRCDQDAQ
    dna_start: -56213353
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 684
    seq: gtcgcagaacttgaaaagcgcctgacagagctggagacagctgtacgttgtgatcaggatgctcag
    inframe_stopcodons: []

    dna_end: -56213287
  - dna_start: -56213287
    type: intron
    nucl_start: 750
    seq: gtcaggtgttctcctgtacataatctgagccttagatcctgcaactctaggccttaaggtctacaacattccacataagcctgggaggagtcatcaaagggcttcagttacagggatcagctagtgggttcccagctagaaccaggaaagatgggagaagacgataatcatggagatataaggaccactcacttcttcccttcctttcccaccag
    dna_end: -56213072
  - overlap: 
    mismatchlist: []

    prot_start: 250
    nucl_end: 789
    prot_end: 263
    translation: NPLSAGLQGACLM
    dna_start: -56213072
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 750
    seq: aatcccctttctgcaggtctacagggagcctgtctcatg
    inframe_stopcodons: []

    dna_end: -56213033
  - dna_start: -56213033
    type: intron
    nucl_start: 789
    seq: gtgagtttggaagaaactggagtgtttggatcacagaggggatagttgggtttgggtttgctttgaggattatttttgagtttgtagctatatattaatttagtggaatatgggaggcctcttgctagtctgcctttcctcttcatgatgcttgtcccaacttccatccccag
    dna_end: -56212860
  - overlap: 
    mismatchlist: []

    prot_start: 263
    nucl_end: 867
    prot_end: 289
    translation: ETVELLQAKVSALDLAVLDQVEARLQ
    dna_start: -56212860
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 789
    seq: gagactgtagagctgttgcaagcaaaggtgagcgccctagaccttgcagttttggatcaagtggaggctcggctacag
    inframe_stopcodons: []

    dna_end: -56212782
  - dna_start: -56212782
    type: intron
    nucl_start: 867
    seq: gtattaaatggagggaaaattaaattatggatagcttgggactctggaagccctggatgccctatcaaccttaaaatctgtgttttcag
    dna_end: -56212693
  - overlap: 
    mismatchlist: []

    prot_start: 289
    nucl_end: 939
    prot_end: 313
    translation: SVLGKVNEIAKHKASVEDADTQSK
    dna_start: -56212693
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 867
    seq: agtgtcctgggaaaggtgaacgagattgccaagcataaagcctctgtagaagatgcagatacacaaagcaag
    inframe_stopcodons: []

    dna_end: -56212621
  - dna_start: -56212621
    type: intron
    nucl_start: 939
    seq: gtcaggaagacaccttccccatctcctttccactccctcaggttctccgagtggcagtgtcaaagcatgagaacacactgactcctcaggtccccatcttcataagctcttatgaagagcttatcagcttggaaagtcagggcactgcttccctctgcccacttgatcctttcccccattacggtgaaatagcagtctgtacatactgacctggctgcctcagccatcccctctgggccccattgtgtcccttcag
    dna_end: -56212365
  - overlap: 
    mismatchlist: []

    prot_start: 313
    nucl_end: 1042
    prot_end: 347
    translation: VHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQ
    dna_start: -56212365
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 939
    seq: gtgcaccagctatatgaaactatacagcgctggagccccattgcctccaccctccctgagctggtgcagagacttgtcaccatcaagcagctgcacgagcaag
    inframe_stopcodons: []

    dna_end: -56212262
  - dna_start: -56212262
    type: intron
    nucl_start: 1042
    seq: gtgggaggccagctgccaggagtgctaagagaagttgaaaaatgggcaacttttggtcccctcccttatcttggattcaagtctcaaccatacttttcttttgtag
    dna_end: -56212156
  - overlap: 
    mismatchlist: []

    prot_start: 347
    nucl_end: 1134
    prot_end: 378
    translation: AMQFGQLLTHLDTTQQMIANSLKDNTTLLTQ
    dna_start: -56212156
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 1042
    seq: ccatgcagtttggtcagctcctgacacacttggataccacccagcagatgattgctaattccttgaaggacaataccaccctcttgacccag
    inframe_stopcodons: []

    dna_end: -56212064
  - dna_start: -56212064
    type: intron
    nucl_start: 1134
    seq: gtgtgtgcccctttgttgatctgtcctcctttctccagcatgtgcaaactaggttctccagtgttatagggttctgccttagcctattttgtagcatggtgttgtggcagggggttggtctggagtctccatcctgctttcaatgtgaaggccctttgacaacttatttaacctatgaacctccatctttccatctgggaaattatacctccctcagagttatgtagatgaggtgaaataatatgggcaaattgttaggggctagtgaacatgttttcttataaaaccccactctttccctttgtcgtctcaactttactctccctgataagcacagtacactggaaggaatccgggctttgaagtcagaagcaggccctaatctcgttctgtcgcttcctttctggccctggacaatgagcctcacctagctccttcattcttttagtaatgcctggcacacagcaagtccacaatttcttattgttttttatttttaagacagagtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactgcagcctccacctcccgggctcaagcaattctcatgcctcagcctattgagtagctgggattacaggcacgcaccaccacacctaatttttttttttagtagagacggggtttcaccatgttgtccagggtggtctcaaactcctgacctcaagtgatcccacccatctcggcctcccaaagtgctgagattacaggcgtgagccactgcacctggccgcaagtcccaatttctgttggaggcactgttctcagtgctggaaggagcattaaagtcgagagaccagcatcaatcacaggatcactgagataaatgaaaaaatatataaaggacttagaataatatccttttcctccagagcagttttctaacattttgaaccagtgaaaccctcatttcaacaaaatcttatttagctctcattacataaaacagattttaaaaaactgttctggctgaagtcaggatgggaattctcgagtcctacctgcttgggctcaccccaagcgtggtctatgtactctaagggtagcttgaaaattggtgctataaacatcccccctctgtggcccacaaattgtgcttccatttcttgtcttctctctcagagaattccttcaggtcctcatccagttaagcaactggacctgacaaagagtaaaacctctctaccactttgtag
    dna_end: -56210825
  - overlap: 
    mismatchlist: []

    prot_start: 378
    nucl_end: 1218
    prot_end: 406
    translation: VQTTMRENLATVEGNFASIDERMKKLGK
    dna_start: -56210825
    type: exon
    seqshifts: []

    undeterminedlist: []

    nucl_start: 1134
    seq: gtgcagacaaccatgcgtgaaaacctggccacagttgaggggaactttgccagcattgatgaacggatgaagaagctgggaaag
    inframe_stopcodons: []

    dna_end: -56210741
  unmatched: 0
  prot_start: 0
  stopcodon: tga
  downstream: tgagcacatttgggagctggagaacaggggttatccctacccctgtgaactctgttaacagcttacatagggtttcccctttactataactctagcatccccatcccatttgacactgggggcaagggttcttcttgcatgtggggtttatacccctcccctgatgaatacagagtggtagctaggggttggttatcatcagaaggtggtctcccctcaggcctgggggataaggacgtgggcccagccacatgccaactcatgtccaatactgctttgcctggtgtggggaaggattgggtcttgtcccccaacacagcttctgtggctgactgtaatactgtacaactgtttctgaccattaaatgctgttgtactctgtgtggcctctgctgtgtttcctggggaggaagcagcactaggatatagatattcattcgtcataacaggcaatctaagccactctatactacaagagatggatttaaattgtaacctgttcttaccaaagaactaaataaaaaatgagtacagagccagagccagagtttcaaaatattctcatctgttaaattaagagtgtctcccatagaaaagcagtggaggccccacagggcaagtacaaaacagaattaaaactcccaagggtcttgtctttacaaaagaaaaggcaggaggcagcccctggacagctggtcatgctggccgctccggttggaccacgttgcataatcctcagtcgcatcatcacaacgtctctgagcgttttgatggggggagaaggggcagtgtagtgtgtatgggaggagaggcccagagggctctctttgcccccttacccccttttttatatcccagaggaaagtcgggggaacctggctacaccttgaaatgaggctatgtgtttcaaacctggggacggggtaagagaggatctgtgctttgagcaacctgagccagaggcagaggggtgttggaggggtaaggggaggatgcatgatgcttattgctttgtacctttcactgggaaggagggcagcagccaacagtagctcacaggtttgtaaactgagcctgttggctttaagaagggaggcaatgaaatcgaattaaatataaaagagtcatttgtgcaaaaataacttaaacaaataaaagacctggggaagggggtgttccccttagcgcctggtggggaaagggccatataccatcccccccaggccttttcagtgacatggcttcgggggggcgggggggtggtgggggggggtgaacttccctgccccctgcaatggctcaggatgggattgtaggggaaggagttgcatttgtgctctgagtggggagtagtgcccccacccactgtccacaggtgcaggtggctggcaggggctcccaaggctcagcactcagctctccccaatcagggtcagatccagctccaggtatggctgctatggggccagtttcctcctcttgtttttggcaggacggccagggcgggcccggggaggcagagggacagctgcctaatatcagaggggaagttgatagaagtggtcaattgctaggtatcaggaagtcttcttttctccccactccctctaaccctcctttcctcctgccgcctcatcccttacaccctacccatccacccatccacccaaacacacacttactcgggctgtagggctgggttccaaggtaatgtcctggcgggagctattgctgttccgggtagggctgcaataaggggcacagatgatcaggaacagctcccaagcaccaggtgaatttcagaagtttgggtgggaaactttctacatttggatagtaaaggcataatatccttattcatattcaaataagaatctgcccttttgaaaaccaagccactatttggacattagaactgtccaaaccaaaaagaagtaggcaaaggccagcactatagtaggcccaacactcacttgtattttctcctacggccacgacga
  additional: 0
  prot_end: 406
  ID: 118
  dna_start: -56227113
  reason: 
  downstream_gap: 
  upstream_gap: 
  target_len: 132349534
  strand: 
  - 
  target: chr12
  upstream: tgcagcccctggaaagaaccaccaagaagctggccaaattgatttttctccatgtcacaggcctctgctggccaacagagagttggactgcaggagttgaggttctaggcaaagaggaagggcagggtggatgggagaaggaggaggaaaggaaagttctgctcagcaactgtctggtgagtggttaaggtcacttaagacactatgggacaaaagtaagaggctgatagcctggccagacaagacctaactattcagaactcagggggtttcccacattggggctacacctctaacctaccttgaatcttaagggaactgaaagaaaagagtccaacataaggaatgggacaggaaagctgtaggactatggagaaagggatagaggcttggggaggagccaggagaaagaaagacaacgagttccgaactcaggaactctctagtcacttggtttggcacaatttctaagtgttgcagcatcctgcaagctcaggaaacatcctgggaaacatcccatccttgggtccccaggggctccaaggtggcatctttagtaaaggggtttcaaaatgccagtccatggagggtcactggtcagagacaaaagttcactgagtatgccctcacctccaaaagaacaatggtgagtttttttttaatataaagatggatttgataagtttcaaaggactatcttttattctgagtgtgtccttcttgcttttctaccaagtaatgatggtgacagtaaataataggttttctatttgtaatatacttacttgataaaataaaaaggcaaatcttcaaggtttgtagttgttttaattttattgaacgatgaaatttaaaagtctgagaacggaaggtaaggttggtgaataggtacaaaaaattagaaagtataataagacctactatttgatggcacaatagggtgactatagtcaagaataactcaactgtacattttaaaataacttaaagagtaattggattatttgtaacttaaaggataaatgcttgagaggatggataccctcttctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatctcatgtgtcccataaatacatacacctactgtgtacccacaaaattgaaaaaattgaaaaataaataaaagtctgagaactattaacgaagtagttaagagcccagagagtgttcagacagacatggagacaccacttacctacttatgaacttcagatagaattgccagatttgaaaaacaaaaaacaaaaacaggatgcccagttaaatgtgaatttcagatacttaatttttggggggttagtatacccacacaccacacaccacacacacacacctacttattatctgaaattcaaattatctgaaagcccttacttgagaagattgcctaactttttcattcctaacatacactacgcgtttactaaattttacttcttgtttttattttgtttttataatacacagtatcaagcaaacttcttgtttttgaaaccccggctgtgtcacagtatgactacctgtatcatttaatctagtcattttattcctgggagccccaaacaggaattataaatgttctttcactgacttgctgtaaaagtgagagaaaaggctgtatgaaatagctccccaaggttcgttattgtcgctccccgcccaagctccagtacaccaaaactacacatcccacaatcctaggcggcgtcccctggccattacctcattccctggcctcgttctccccaatcccggcctctccaggggtgtggcagcagggctgttctcgcgacttttgctttacccttctgctgtgctactgctgtcgcgagacttcctgctcatctgccgctccctttgccgccgccttagcccgggacccgaacccagcctctcccctacccgaacaccggccccggctccaccgaggcccgggtcccccagcccgtctcgccgccgcc
  score: 1.0
  prot_seq: MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK
  prot_len: 406
  status: auto
  undetermined: 0
  mismatches: 0
  matches: 406
  dna_end: -56210741