### Scipio v1.4 (20100617-unreleased) output # query file /tmp/hOgQKjBAzdVe.fasta # target file /genomes/genomes_ucsc/Homo_sapiens_v18_chromosome.fasta # BLAT output /tmp/wGU0DZ7TZSfK.psl # Timestamp Thu Jun 17 17:29:02 2010 --- HsP50__fl: - matchings: - overlap: mismatchlist: [] prot_start: 0 nucl_end: 36 prot_end: 12 translation: MADPKYADLPGI dna_start: -56227113 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 0 seq: atggcggaccctaaatacgccgaccttcccggcatt inframe_stopcodons: [] dna_end: -56227077 - dna_start: -56227077 type: intron nucl_start: 36 seq: gtgagtacaggaccggccccggctccccaggaccgcgcccccgacctcccaaggacccccagcagaaaccagcccgcgacccctcccgcctgcagcccatcctccgcccaagggctcccgccgctcgttctccgatcggcctcagcaccccccgaactcttctgacccgactgggccgggccgccggacggcgcaccaggccccctttccggcagtcgccggtagctcggcccagaaatcgactccgggtactgacctcttgtgcctgagtttttccaccatccgtgtcaacgcctcccatgtcccccccaaatctctccataagaccccatcgctaccccagacacacacaccagaccacttaacgatggccttcatcctgccaaggaagaggttctgccatctggcagaaccctcttgtgccagatggggagctctatccttgagggaacctatgccctcccccagcccccactcccatgacaatcctggcgtgtaccttccttttgtgctgccctgcctgcttctcaaggtgagggttgggacacaggaccttgagtactaaggtcctgagtcactctcaatccttgtgccagggtggtggtgtacggggcctaattggaggatagccttcaccttctttggcaatagtgattgccaaggacctgcccgcctctagatttagggtaacatcgttgctatcacttacactcaccgtttactgtcaggtcccaattgtttccgctgtcatccctaccccttgagacatgggaactgacatactgttgactcacggggcaggtggaggagaaaggacagaaccctgacatcacaccccgccttctctgttagcttattcaaatggagtgggggaaggggtgttgttggatgctgggtagtgaggttgggtggtcactgcttctacctgcag dna_end: -56226146 - overlap: mismatchlist: [] prot_start: 12 nucl_end: 105 prot_end: 35 translation: ARNEPDVYETSDLPEDDQAEFDA dna_start: -56226146 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 36 seq: gccaggaatgagccagatgtttatgaaactagcgacctacctgaggatgatcaagcggagttcgatgcg inframe_stopcodons: [] dna_end: -56226077 - dna_start: -56226077 type: intron nucl_start: 105 seq: gtaagaatgtgtgctgccacagactcctccggactctgacctttctcccctagacaggtccttccctttctcgggggagctacagcaataagcgggtatgccaaccccagcctgggtggtatataggttgcagggcttgcaaagaccttgctgggcttgcagccaccaatgagcaatggcaggagggagagtcaagtcagcggaattacagctaacaacatctgtttgcaaagccctgattcttgggccttttaaataaaattgaaatatctcaaaacaggtttggagctagtgacttaggcccctgggttctaacccatggaaatgaatcatgaagcctgggcacttgtaataaactgctaccaagaactagactttgaaatatggagaaatactttttccatatgaatatccagtatccattgggcaaggaattaagaaagtgattccaagattttagagcaaaacaaatttgaggaagaatgtaaatatttcacatcagcggatgtgagactgtggttgcatttttagatccgagaattctgaggatggagtaattaggtacggatacattttaactgtgaggggaaacatttagtatggtttattgagtgtgttcattctgtggttttttttgtgcaatgcagaggaagaaatgtctctgcccccaatgagccccagactaatggggaattaggatacatataggaaacatatagaaggaaaaaaaaattgagtgaatggaaatcaacatagtaaaaactctgtttaagtgccaagaggtgtgtttataggatgtgttttaggttctattatttctgaagacagctgggctgggatcacattgatgatgtgagttctcagtaaagatgtgtccaagagtcattgcaatatgcaggctcagtatgcttgtctgtaagtcctgtggctatgtctgtggggctggttaattctggggaatgctgactgctggcttacaatgtgtggcttggcgtactcacttatttcttatttgactcccccatgtggaagtggttcttacattgtgggaaacaccttctctgtcccttctcccagtggtgtgttccttgtggcttctgtatttgctggcatgccaatctatcccctaagcttgagtatcttggagataatgcagatgatgttgttgctcaaggacctgggtgtgcacctgtcactccaagaggcatcttataggaagctgcctctgtcctcacagaataggagtgtatacaatcggttctctgtatttatgggttccaaacccatggattcaaccaatcacaaatggaaaatattttttaaaaataaaaaataggcccagtgtggtgattcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcatttgaggccaggagtttgagaccccgtctctactaaaaaatataaaaattagcaaggcgtggtggcgagcgcttatagtcccagctactgtggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagattgcgccactgcaccccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaccagtacaacaataaaaaaaaaaacaaaatttaaaaatacaatataacaactatttacatagcatttacattgtactaggtattttaagtaatctagagatgattcaaagtatacaggagggtgtaggtaggttatatgcagttactatgccaatttatatagaagatgggaacatatgcagattttggtatcaagggaggtcctggaaccagtctcccacagttgccaagagacagctgtatgctgagaactttactgcactaccacagttcagactgttcaacttaggcctaggcttctgcccttcatggtgagataatgaatagaactcagtccttttgtcgctgtgatacaaacaggtagtttcacagtaatcctctttctaaacaaaaaaatacatattgtcattcccttttgaagatactgggatatctcttaataaaaaggagatgacacccattccaggtgtggaagaacctgactgtgcagctctgattggctgtttctcccccagagcctgaacagcctattttagtagcatctagtggggtggctgatgaggagaggatactgtgagtgttcatttcctgtggcatgttgcccaggatgccagtatagaagtgcatatgagctgaatggcaaatacaagaagagctgaattgtttctgtcacctaaggctcagctaagtgactctctgtcactagggaggaatggggtgggcagaccttcagccacttcaggggcccgaagagccaagatgtttcctgatgtcagctaatgtctctggcccccgcatgtccctatggggcttgcagcttttgggaagtcagctgagtaatggctctgccactgcttttaatactgacgtaaatatgcaatttgaggagcagtgaattgtatgcttagataatctagaaatgtcatgtccgtgaggcctgggatctcaccagcagcctgtctgtttcctgcctacctgcccaagacctagtacaagtgacagtgcacatgacctgtcttgtggctgaaccatgagattttcagtcaccttctttttttttcttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcgagctccacctcccgggttcacgccattctcctgccttagcctcccgagtagctgagactgtaggcgcccaccaccacacccggctaattttcttgtatttttagtagagacggggtttcatgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgtcttggcctcccaaagtgctgggattacagacgtgagccaccatgcccagcctcagtcaccttcttaacccctgacaacagcattctccgccttaatcttcagtttattttcaactttaattttatcagtttttaaagtaggtaatgtatgcacagggaacagaggattcaagggtaagtagtgaaaaatctgcctcccacctctgcctaccaccactcagttctcttccctagagacaaccaatatggatagactcttgtggaacctttcagggggtctccagatttctttttggtttttgagacagagtctcactctttcccccaggctggagtgcagtggcacaatcttgtctcactgcaacctttgcctccccggttcaagcgattctcctgcctcagcctcccaagtagctggaattacaggcatgtgccaccacacctggctaattttctgtatttttagtagagatggggtttcaccatgttggccaggttggtctcgaactcctggcctcaagtgatccatccatcttggcctcccaaagtgctgggattacaggcgtgagctaccatgccagccgggtctccagatttctgtctaaaggaatagtcaagttgtgttgaccctcactgctccataactttcttcctgtgattcctccactgtggaagaaattgggctactaaaggaaaaatgtcctcaaacatcccttaaagatttaaattgctaatttaacttaaacataaacattttccgattcccatagtggggaggatgggggaggaaagcataaaagatttaaattttgctacagatgatcgtgaatttttttttttttcaagatggagtttcactctttttgcccaggctggagtgcaatggcgtgatctcagctcactgtaacctccacctcccgagttcaagagattctcctgcctcagcctcctgagtagctggaattacaggtgtccatcaccacacccggctaattttttgtatttctagtagagacagggtttcaccatgttggctaggctggtctcaaacccctgacctcaggtgatccactcacctaggcctcccagagtgctgggattacaagcatgagccactgtgcctggccaatcctgatttttctactatccctttaaaacaattttagcaggaagtaaaatcttctaaaacaggaatggaccaggaaagtgcacgggctgtagccctttcctcctcaatctgggaagatctctttgcacttcagacactcccaggttaattggggcaataggcttgcttggagatttttcttaaaatgtttggaaaactaattcccaaatagaattccacccacacacacaccccgaccctaacccctgggcccacagcctgccttgggtcagtgaggctttctgctcatggcttttgaactgctggaataagggaagtaaattaagaaaaacctcattagaaacaatttagcttctctctttatggcataactacccgcagtaaaaggggaaaaaatgacctagccatagtttgatggggccctggcagaggcttcatttctccaaaaggtagatattactggacactcctgagatgagaaacagtacttccttacagtttagaagatcctggagtatgcttgattgtgttcattgactgttggcgcacttgaacttacctgagtttttcctaatgcttcccccatcctccctcctcaccaccttgcctggacactag dna_end: -56221422 - overlap: mismatchlist: [] prot_start: 35 nucl_end: 114 prot_end: 38 translation: FAQ dna_start: -56221422 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 105 seq: tttgcacaa inframe_stopcodons: [] dna_end: -56221413 - dna_start: -56221413 type: intron nucl_start: 114 seq: gtaagaccattcaatgcttcttctctgcatgtttttttcatctgccatctcgcatgcaatgctctgccactgtgctattgttgtagctaatcgttttaaattccagtgagtccctggctgggtcactgaggggcctgctggccttatgtttaaagatcattaatcaagggttagaaacagctatgatccatgaatcattgtctcttccccttgtgaggtctgcagagtaaaactgtccagtggaggatgggatagaagcatggaggctttaaatgtttttgaacatgaggcatttaggggctggagttagaaggcagtttcctttctcctcctcagactaagatcaaatgaagatttttttatggaatgacttttagctattctagacaaggatagaaaacaaaagggatgacagccacagtcctcagttcttggctgtatgtggattatctctgggaaaaactcattttaatattcccctatgctaggtctttagagaaatgtaaatgggatgagaaggaggtttatatgcaattgtaagataacttggattatttgtgcttttgtgagtctttctgtttctgcacccctccttttgaaatggatggatggtcagcaatatattgatccatcccggacagttttactctacagctctgtccatcttccttgtcatcatggttttgaagtaccctggctgcagtgttggcgtacagcctgaataggctcagagagtaacagtggccactttccctgtctgatttagaacctcagatcttgccctctgaggcacagccacttagccaaacagccctggggggtctgggagtcccttagtgaaagagactgggagtcacgtactaggtaagctggcacccggggccagggcacttgaaatcttccaatcaaggtgactagtactactccaggttatgcaggaatcatgcctaaaatctcatcaaccttcaacccacccataggacagacctggaggtggtatatactatctgcaaactaatataccacttttccttttatttgattttctgtcctccctattctgcccaatccgcatggtttgaaattgagcttatggcccattgtcttctttctctccttgagtttctcccaagctggttttagcttggtgggacaaatcagagaaaggtatagtgtgtgtacttctcctttgtgtttgcatgtttgcacttatgggtgcttacacccactctatgcagagacatcccagcctcgaccacaggatctggagccacctctaccctgagctgaaagaggaattttttttttttttttgagacagtctcactctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaacctccgcctgccgggttcaactgcaacctccacctcccgggttcaaatgattctcctgcctcagcctcccgagtagctgggattacaggcgtccaccaccatgcctggctaattttgtatttttagtagagatggggtttcaccatggtggccaggctggtctcgaactcctgacctcaagtgatccacccacctcgccctcccaaagtgctgggattacagatgtgagacaccgtgcctggtggaaagaggaatcttggctgggaccctagcatcgtctagggaacagagaggttgtgattaagaggtatctggatgaaatcttggtgaaaggaagcacttgtttttaatcccaccatggtttttcatatgcatacaaccatcctcaaccatctgcccatcagcagagctcctagaaaggcaggacataccactggatatccccttctggcagttctaaaccagccttgcccggaagtgggagccttatctatgtggcccagactcaaataaggcctcttggaaatactctcacccttcccctttgtttaccctccaacccctgtgaatcttgtgaacagagggttgaagaaacatgttctgcacatgtgctagtacctgtgaatcttgatgtcccctggaccctctgtgtaagtacatcatggcagaattgctctagatccttcggagctgcagggtgagttaccagccactcaaggtggaggcaaacatgccaggctgcacaagggaccaggagcagctctgcctcttcccttgcaggaggaaatgagaacggggctatacttaggtacttcatcattcctttaactcaccatctgtacctgacatattttgttttgtctcacctaaagtcatatcagacttcctacctgatcactctcattgtgactgattctgccatccaaatgtctaatttttcacagctagagaaactaagagataggaagacaagggccatgaactaagaaggggaactcctctcctgagaattattgaccctctatcagctacaagtctaagaatttctaacttctgcttcatcttctaccatttctaatagcttccccaccacctcagccttctctccccagtttcttattccatgccactggctggtaacatctaactcctagttttcagatgatcctaaactgctgctgttaatggcaaagcttcatgacatcctcaccaccagagggaaaagggtctcatgctcttctttctcttggggtatatggtgaccccagctgaaatttcttggcccctaaatttcgctaggctcccctggggccctgtggtgcagtgtgttggaagactgtcatgtagtgcatgtgacaatttgctaataacaattttgtcttttttttccctccctcatccccattcccccactccctttccttttaactcttttgattttctcacctctggggaaaccacaag dna_end: -56218574 - overlap: mismatchlist: [] prot_start: 38 nucl_end: 120 prot_end: 40 translation: EL dna_start: -56218574 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 114 seq: gagctg inframe_stopcodons: [] dna_end: -56218568 - dna_start: -56218568 type: intron nucl_start: 120 seq: gtaagaagcctgacctttcatctgctttttaacggggtgtgctatgatgagcagttgtttctctgtcctttagactctactaaatctttcattcatctattcagtcccacacccagccttttcctatctcacaagtcactgtaattatactgcccccaactcatgccccagatcttcaagacactgctggagtaggtgctactggaggactagagtgtgctcccgggccacagccttggagaggctccagaggatgccagcgccaggtagcccaactggcccaggacactctcccacagcaggaatgaaaatgctctctgtccctgtgactgtccagaacctctgagactcaccgtctatgtgttgaccctcttctactccccgctttccctacttaggaacgtaaataagaaagtaggttccatctgcatagtgcccgcccataataagggcttaacaaatggtagctatgattaatttttttcctgggtctgtaggttatgcctcccattcctcttttttaagaggattaaacaaaagaggatgggtgggattggcctggattggggctttcacagggagaagtggcatattcctgagtatgaacttcagagaagatggttgtctatccttagcctgagcccttcccagttgataagaggccagagatcacacagctattagatgggtgggtgttctggccgtaacatttcagaacaggttaaagagataatcatttgggactcaaatgtctctccccccgggcacttgcatatgggacattgagtccttttgttttcccttgatctatagctcttacccctctgcccagtaattccctgaggaagaggtaaagatcaaagttgatactttgtcctttccttccttcttcccttatttttaaagctgtcacccacactgattcctgctctaatagcagagcagagatgaaggaaggagcttccttctatctgcttttctttctcaatgatgtcccaccatgtccccctcacaccctctccccacatacctacacacaggcagagattctcagtcctggctgtaggttagaatcacctggatatctggccctaccccagaataattcattagaatctctagaagtgggcccaggcctttttttttttttttttttcttttctctctctctctttttctttttttgagacagggtctcactctgttgcccaggctggagtgcagtggcatgatctctgctcactgcatcctccacctgccaggctcaagtgacccttccacctcagcctcctgagtagctgggaccacaggcacgtgccacaatacccagctattttatattttttgtagagttggggtttccctatgttgcccaggctggtcttgaactcctgagatccacccgccttggccgaactttgggaggccgaggcgggtggatcacttggaattaggatcctcccaaagtgctgggactacagacaggcttgagccaccattgcccggctgtctatttaaaaaaaaaaaaaaattataagtgattctaacatgcagcctggggtgagaaccattgttctaggtgaaagaaggaaggctcattttgccttcctcccatagaaggtagagatgtcatccccaacagaaaaggactcctgggtctccctcctacttccatcagtactctgttgggagctgtcaggcttctgacaattgaaaaagggacatgcagtcaggagtgcttggtgcagtcttggtgttgtcactggaatctgaacagcatgtagatatctagtaaggagggaacctctctgcttcagtttctagggtgaagtctctttcaccgcctacttgtgtcccctgtttttggaagagcttcagtgcttaaagcatagcagaggagtcagggagaaaaatcaggtgctgcagcgtctctgaagagatgctggtttatctccatttcagagcttacatgtggctcttgcccatggatactcttggcaagcagatattgcctatgtttgttgcttctaagatgtcccataaagataatccagtaagcccttgccccttctccctgtccctgagttcgctggcctcatggcagcctggaaatcaggcttctggtcaggccctctgtcggccttctttttgtactaagagcttgtgtcttaccttcaacaggtttaaagtcctaatattcacactcagtgttagtggcctgattatctgccttccctcctctttccttctagcaaggatgggaggttagcattaaaatggacttgctcagcgggcaagatttacttttgggagggggaggttaaaagaggtcaggttggtttcttgccttgagtgcatggcgtgtgccagacaactgggaggggtagcatggggggatgggaaggcttatgtacagagagggtggggaggttatgctccctctgctcccagttgaatgagggtgttaatatttatacaactgaggctccaaatttaccaggaagcttcagtttcctaggttaagcctgggtaggcgccttggaatagagccacccttctttccccttggacaagtagggcccagtcacctaatggtttggggattttgtggggtagagtaagttctagagtgggaatgagtgtgtccctggcctaaactacctgttcttgcag dna_end: -56215895 - overlap: mismatchlist: [] prot_start: 40 nucl_end: 217 prot_end: 72 translation: EELTSTSVEHIIVNPNAAYDKFKDKRVGTKGL dna_start: -56215895 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 120 seq: gaggagctgacaagcacaagtgtggaacacatcattgtcaatcctaatgctgcctatgacaagttcaaggacaagagagtggggacaaagggacttg inframe_stopcodons: [] dna_end: -56215798 - dna_start: -56215798 type: intron nucl_start: 217 seq: gtgagactgggctggaagctgggtggggggaagactggaggataagcatgagaagtggtttcctgtcctaaagtcttagtgagttgtgcttgggggaaggggtccctcatggagatattttatggaagccctcacagtcacctgagaccatgactgccttgggcctagatcaggccctcagttccatcttcttttcttggcag dna_end: -56215595 - overlap: mismatchlist: [] prot_start: 72 nucl_end: 279 prot_end: 93 translation: DFSDRIGKTKRTGYESGEYEM dna_start: -56215595 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 217 seq: atttctcagatcgtattggaaaaaccaagaggacaggatatgaatctggagaatatgagatg inframe_stopcodons: [] dna_end: -56215533 - dna_start: -56215533 type: intron nucl_start: 279 seq: gtttgttgtgtgtgtgtgtgtgttgatgggaatggtgtagtgaccctatctagcagacatgtagtagggagatcaagggatacaggcgggattctgttcctcctctgttcctgaggaagcagcaggatgcagccagggaaactctgccctactgctgtttgttctggagagcctccagccctctagctgtcctcagttctttggtactagggtgttgtggattctcaattggatatgatacctttatgacttaggcccagggtgtggatgaattcttgaggctccctgtaatgagacatataacattaccctctgtgcctgctctctag dna_end: -56215204 - overlap: mismatchlist: [] prot_start: 93 nucl_end: 378 prot_end: 126 translation: LGEGLGVKETPQQKYQRLLHEVQELTTEVEKIK dna_start: -56215204 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 279 seq: cttggagagggtctgggagtgaaggagacaccccagcaaaagtaccagcgcctactgcatgaggtccaagagctgacaactgaagttgaaaaaatcaag inframe_stopcodons: [] dna_end: -56215105 - dna_start: -56215105 type: intron nucl_start: 378 seq: gtaactacaaactctcttctcccttctctgctgtgacttacacagtagaggaagacctcaagcaagaagagaaagattccctgcctggctgggtgcggtggctcacgcctataatcctaccactttgggaggccgaggcaggcggatcacctgaggtcaggagttcaagaccagccaggccaacatgatgaaaccccatctgtactaaaaaaatacaaaaacttagccaggtgtggtggcgcatacctgtaatcccagctactcgggaggctaaggcaggagaattgcttgaactcggaggcggaggttgcagtgagcccagatcatgccactgcactccaacctgggtgacagagcgagactccatctcaaaaaatgaaagaaagaaagattccttaagctcctggataaaggggctaaggtttccagagtttacaaatatgcatccatctgtatgcagtgctacatacaggtgggcagtctgtcatgctgaaaaccatcccagtgacctccagctacaactacctttaaagggcttgacctatttttttgcttcttgattcattcttgccatcccccgatttctaccttttttcatactag dna_end: -56214502 - overlap: mismatchlist: [] prot_start: 126 nucl_end: 539 prot_end: 180 translation: TTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK dna_start: -56214502 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 378 seq: acgacagtgaaggagtcagccacagaggagaagctgacccctgtgttgctggctaaacagctggcagccctgaagcagcagctggttgcttcccacctggagaagctgctgggaccagatgctgcaatcaaccttaccgaccccgatggcgccctggctaa inframe_stopcodons: [] dna_end: -56214341 - dna_start: -56214341 type: intron nucl_start: 539 seq: gtgggtaccctactttgttgaaaaatcattgctgactggggttgtggatggactcagccagctactgacaggggtgctaagtggcagagaagtggcttagatgtttcttaatgctgattatgaggcaaaagtgagggagagtgactggcccttctccttccagtcatgatattattactcggtctcctaactag dna_end: -56214147 - overlap: mismatchlist: [] prot_start: 180 nucl_end: 684 prot_end: 228 translation: RLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAK dna_start: -56214147 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 539 seq: gcgcctactactgcagctggaagcaacaaagaacagcaaagggggatcagggggaaaaaccactgggacccccccagatagcagccttgtcacttatgaactacattctcggcctgagcaggacaagttctctcaagctgccaaa inframe_stopcodons: [] dna_end: -56214002 - dna_start: -56214002 type: intron nucl_start: 684 seq: gtaagtgtggatacagtgttggttgggaagccaaggggagatgtgaccctagagattttcctgcctctctccaaggagagggtgctgggaaggcttctgattcctctgattcctcttgattgattcctcttttgattcctgattcgttgttctctatgtttctttcttttttttttttttttgagacggagtcttgcactgtttcccaggctggagtgcagtggcgcaatcttggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctcattttttgtatttttggtagagatggggtttcaccatgttagccagaatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagcactgggattacaggcgtgagccaccgcgcccgacctcattctctatgtttccctcgcccatctacctttggttaggattttaagattgtggctaggtatgtattccagggaaaggaatcccttggggtggtgagtggcaggcagagtagagcaggatcgtattcctcccattgcagcagcagggaagcagatggcaaatctcacctccttcctcccactag dna_end: -56213353 - overlap: mismatchlist: [] prot_start: 228 nucl_end: 750 prot_end: 250 translation: VAELEKRLTELETAVRCDQDAQ dna_start: -56213353 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 684 seq: gtcgcagaacttgaaaagcgcctgacagagctggagacagctgtacgttgtgatcaggatgctcag inframe_stopcodons: [] dna_end: -56213287 - dna_start: -56213287 type: intron nucl_start: 750 seq: gtcaggtgttctcctgtacataatctgagccttagatcctgcaactctaggccttaaggtctacaacattccacataagcctgggaggagtcatcaaagggcttcagttacagggatcagctagtgggttcccagctagaaccaggaaagatgggagaagacgataatcatggagatataaggaccactcacttcttcccttcctttcccaccag dna_end: -56213072 - overlap: mismatchlist: [] prot_start: 250 nucl_end: 789 prot_end: 263 translation: NPLSAGLQGACLM dna_start: -56213072 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 750 seq: aatcccctttctgcaggtctacagggagcctgtctcatg inframe_stopcodons: [] dna_end: -56213033 - dna_start: -56213033 type: intron nucl_start: 789 seq: gtgagtttggaagaaactggagtgtttggatcacagaggggatagttgggtttgggtttgctttgaggattatttttgagtttgtagctatatattaatttagtggaatatgggaggcctcttgctagtctgcctttcctcttcatgatgcttgtcccaacttccatccccag dna_end: -56212860 - overlap: mismatchlist: [] prot_start: 263 nucl_end: 867 prot_end: 289 translation: ETVELLQAKVSALDLAVLDQVEARLQ dna_start: -56212860 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 789 seq: gagactgtagagctgttgcaagcaaaggtgagcgccctagaccttgcagttttggatcaagtggaggctcggctacag inframe_stopcodons: [] dna_end: -56212782 - dna_start: -56212782 type: intron nucl_start: 867 seq: gtattaaatggagggaaaattaaattatggatagcttgggactctggaagccctggatgccctatcaaccttaaaatctgtgttttcag dna_end: -56212693 - overlap: mismatchlist: [] prot_start: 289 nucl_end: 939 prot_end: 313 translation: SVLGKVNEIAKHKASVEDADTQSK dna_start: -56212693 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 867 seq: agtgtcctgggaaaggtgaacgagattgccaagcataaagcctctgtagaagatgcagatacacaaagcaag inframe_stopcodons: [] dna_end: -56212621 - dna_start: -56212621 type: intron nucl_start: 939 seq: gtcaggaagacaccttccccatctcctttccactccctcaggttctccgagtggcagtgtcaaagcatgagaacacactgactcctcaggtccccatcttcataagctcttatgaagagcttatcagcttggaaagtcagggcactgcttccctctgcccacttgatcctttcccccattacggtgaaatagcagtctgtacatactgacctggctgcctcagccatcccctctgggccccattgtgtcccttcag dna_end: -56212365 - overlap: mismatchlist: [] prot_start: 313 nucl_end: 1042 prot_end: 347 translation: VHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQ dna_start: -56212365 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 939 seq: gtgcaccagctatatgaaactatacagcgctggagccccattgcctccaccctccctgagctggtgcagagacttgtcaccatcaagcagctgcacgagcaag inframe_stopcodons: [] dna_end: -56212262 - dna_start: -56212262 type: intron nucl_start: 1042 seq: gtgggaggccagctgccaggagtgctaagagaagttgaaaaatgggcaacttttggtcccctcccttatcttggattcaagtctcaaccatacttttcttttgtag dna_end: -56212156 - overlap: mismatchlist: [] prot_start: 347 nucl_end: 1134 prot_end: 378 translation: AMQFGQLLTHLDTTQQMIANSLKDNTTLLTQ dna_start: -56212156 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 1042 seq: ccatgcagtttggtcagctcctgacacacttggataccacccagcagatgattgctaattccttgaaggacaataccaccctcttgacccag inframe_stopcodons: [] dna_end: -56212064 - dna_start: -56212064 type: intron nucl_start: 1134 seq: gtgtgtgcccctttgttgatctgtcctcctttctccagcatgtgcaaactaggttctccagtgttatagggttctgccttagcctattttgtagcatggtgttgtggcagggggttggtctggagtctccatcctgctttcaatgtgaaggccctttgacaacttatttaacctatgaacctccatctttccatctgggaaattatacctccctcagagttatgtagatgaggtgaaataatatgggcaaattgttaggggctagtgaacatgttttcttataaaaccccactctttccctttgtcgtctcaactttactctccctgataagcacagtacactggaaggaatccgggctttgaagtcagaagcaggccctaatctcgttctgtcgcttcctttctggccctggacaatgagcctcacctagctccttcattcttttagtaatgcctggcacacagcaagtccacaatttcttattgttttttatttttaagacagagtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactgcagcctccacctcccgggctcaagcaattctcatgcctcagcctattgagtagctgggattacaggcacgcaccaccacacctaatttttttttttagtagagacggggtttcaccatgttgtccagggtggtctcaaactcctgacctcaagtgatcccacccatctcggcctcccaaagtgctgagattacaggcgtgagccactgcacctggccgcaagtcccaatttctgttggaggcactgttctcagtgctggaaggagcattaaagtcgagagaccagcatcaatcacaggatcactgagataaatgaaaaaatatataaaggacttagaataatatccttttcctccagagcagttttctaacattttgaaccagtgaaaccctcatttcaacaaaatcttatttagctctcattacataaaacagattttaaaaaactgttctggctgaagtcaggatgggaattctcgagtcctacctgcttgggctcaccccaagcgtggtctatgtactctaagggtagcttgaaaattggtgctataaacatcccccctctgtggcccacaaattgtgcttccatttcttgtcttctctctcagagaattccttcaggtcctcatccagttaagcaactggacctgacaaagagtaaaacctctctaccactttgtag dna_end: -56210825 - overlap: mismatchlist: [] prot_start: 378 nucl_end: 1218 prot_end: 406 translation: VQTTMRENLATVEGNFASIDERMKKLGK dna_start: -56210825 type: exon seqshifts: [] undeterminedlist: [] nucl_start: 1134 seq: gtgcagacaaccatgcgtgaaaacctggccacagttgaggggaactttgccagcattgatgaacggatgaagaagctgggaaag inframe_stopcodons: [] dna_end: -56210741 unmatched: 0 prot_start: 0 stopcodon: tga downstream: tgagcacatttgggagctggagaacaggggttatccctacccctgtgaactctgttaacagcttacatagggtttcccctttactataactctagcatccccatcccatttgacactgggggcaagggttcttcttgcatgtggggtttatacccctcccctgatgaatacagagtggtagctaggggttggttatcatcagaaggtggtctcccctcaggcctgggggataaggacgtgggcccagccacatgccaactcatgtccaatactgctttgcctggtgtggggaaggattgggtcttgtcccccaacacagcttctgtggctgactgtaatactgtacaactgtttctgaccattaaatgctgttgtactctgtgtggcctctgctgtgtttcctggggaggaagcagcactaggatatagatattcattcgtcataacaggcaatctaagccactctatactacaagagatggatttaaattgtaacctgttcttaccaaagaactaaataaaaaatgagtacagagccagagccagagtttcaaaatattctcatctgttaaattaagagtgtctcccatagaaaagcagtggaggccccacagggcaagtacaaaacagaattaaaactcccaagggtcttgtctttacaaaagaaaaggcaggaggcagcccctggacagctggtcatgctggccgctccggttggaccacgttgcataatcctcagtcgcatcatcacaacgtctctgagcgttttgatggggggagaaggggcagtgtagtgtgtatgggaggagaggcccagagggctctctttgcccccttacccccttttttatatcccagaggaaagtcgggggaacctggctacaccttgaaatgaggctatgtgtttcaaacctggggacggggtaagagaggatctgtgctttgagcaacctgagccagaggcagaggggtgttggaggggtaaggggaggatgcatgatgcttattgctttgtacctttcactgggaaggagggcagcagccaacagtagctcacaggtttgtaaactgagcctgttggctttaagaagggaggcaatgaaatcgaattaaatataaaagagtcatttgtgcaaaaataacttaaacaaataaaagacctggggaagggggtgttccccttagcgcctggtggggaaagggccatataccatcccccccaggccttttcagtgacatggcttcgggggggcgggggggtggtgggggggggtgaacttccctgccccctgcaatggctcaggatgggattgtaggggaaggagttgcatttgtgctctgagtggggagtagtgcccccacccactgtccacaggtgcaggtggctggcaggggctcccaaggctcagcactcagctctccccaatcagggtcagatccagctccaggtatggctgctatggggccagtttcctcctcttgtttttggcaggacggccagggcgggcccggggaggcagagggacagctgcctaatatcagaggggaagttgatagaagtggtcaattgctaggtatcaggaagtcttcttttctccccactccctctaaccctcctttcctcctgccgcctcatcccttacaccctacccatccacccatccacccaaacacacacttactcgggctgtagggctgggttccaaggtaatgtcctggcgggagctattgctgttccgggtagggctgcaataaggggcacagatgatcaggaacagctcccaagcaccaggtgaatttcagaagtttgggtgggaaactttctacatttggatagtaaaggcataatatccttattcatattcaaataagaatctgcccttttgaaaaccaagccactatttggacattagaactgtccaaaccaaaaagaagtaggcaaaggccagcactatagtaggcccaacactcacttgtattttctcctacggccacgacga additional: 0 prot_end: 406 ID: 118 dna_start: -56227113 reason: downstream_gap: upstream_gap: target_len: 132349534 strand: - target: chr12 upstream: tgcagcccctggaaagaaccaccaagaagctggccaaattgatttttctccatgtcacaggcctctgctggccaacagagagttggactgcaggagttgaggttctaggcaaagaggaagggcagggtggatgggagaaggaggaggaaaggaaagttctgctcagcaactgtctggtgagtggttaaggtcacttaagacactatgggacaaaagtaagaggctgatagcctggccagacaagacctaactattcagaactcagggggtttcccacattggggctacacctctaacctaccttgaatcttaagggaactgaaagaaaagagtccaacataaggaatgggacaggaaagctgtaggactatggagaaagggatagaggcttggggaggagccaggagaaagaaagacaacgagttccgaactcaggaactctctagtcacttggtttggcacaatttctaagtgttgcagcatcctgcaagctcaggaaacatcctgggaaacatcccatccttgggtccccaggggctccaaggtggcatctttagtaaaggggtttcaaaatgccagtccatggagggtcactggtcagagacaaaagttcactgagtatgccctcacctccaaaagaacaatggtgagtttttttttaatataaagatggatttgataagtttcaaaggactatcttttattctgagtgtgtccttcttgcttttctaccaagtaatgatggtgacagtaaataataggttttctatttgtaatatacttacttgataaaataaaaaggcaaatcttcaaggtttgtagttgttttaattttattgaacgatgaaatttaaaagtctgagaacggaaggtaaggttggtgaataggtacaaaaaattagaaagtataataagacctactatttgatggcacaatagggtgactatagtcaagaataactcaactgtacattttaaaataacttaaagagtaattggattatttgtaacttaaaggataaatgcttgagaggatggataccctcttctccatgatgtgcttatttcacattgcatgcctgtatcaaaatatctcatgtgtcccataaatacatacacctactgtgtacccacaaaattgaaaaaattgaaaaataaataaaagtctgagaactattaacgaagtagttaagagcccagagagtgttcagacagacatggagacaccacttacctacttatgaacttcagatagaattgccagatttgaaaaacaaaaaacaaaaacaggatgcccagttaaatgtgaatttcagatacttaatttttggggggttagtatacccacacaccacacaccacacacacacacctacttattatctgaaattcaaattatctgaaagcccttacttgagaagattgcctaactttttcattcctaacatacactacgcgtttactaaattttacttcttgtttttattttgtttttataatacacagtatcaagcaaacttcttgtttttgaaaccccggctgtgtcacagtatgactacctgtatcatttaatctagtcattttattcctgggagccccaaacaggaattataaatgttctttcactgacttgctgtaaaagtgagagaaaaggctgtatgaaatagctccccaaggttcgttattgtcgctccccgcccaagctccagtacaccaaaactacacatcccacaatcctaggcggcgtcccctggccattacctcattccctggcctcgttctccccaatcccggcctctccaggggtgtggcagcagggctgttctcgcgacttttgctttacccttctgctgtgctactgctgtcgcgagacttcctgctcatctgccgctccctttgccgccgccttagcccgggacccgaacccagcctctcccctacccgaacaccggccccggctccaccgaggcccgggtcccccagcccgtctcgccgccgcc score: 1.0 prot_seq: MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK prot_len: 406 status: auto undetermined: 0 mismatches: 0 matches: 406 dna_end: -56210741