Options for Mutually exlusive exons

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Set Default Options

General options

0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50	Allowed length difference for exons [aa]
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50 60 70 80 90 100	Minimal score for exons [%]
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50	Minimal exon length [aa]
none 1 2 3	Maximal recursion depth

Search in ...

	... up-/downstream region (depends on expert option "Region Size" in previous search)
	... surrounding introns and adjacent up-/downstream region
	... all introns and up-/downstream region

Search for alternative exons of first exon

Search for alternative exons of last exon

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Select data for cDNA alignment

Or Upload cDNA Data (FASTA format, max. 1MB)

cDNA alignment options

cDNA alignment BLAT options

Options for tandem gene duplications

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Set Default Options

General options

0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50	Allowed length difference for exons [aa]
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50 60 70 80 90 100	Minimal score for exons [%]
0 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100	Minimal tandem gene score [%]

Query selection options

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 35 40 45 50	Minimal exon length [aa]
	Search for concatenated exons
	Search for splitted exons

Search with start codon for first exon

Search with stop codon for last exon